3NJR
Crystal structure of C-terminal domain of precorrin-6Y C5,15-methyltransferase from Rhodobacter capsulatus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3njra1 | Alpha and beta proteins (a/b) | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | automated matches | automated matches | (Rhodobacter capsulatus SB 1003 ) [TaxId: 272942 ], | SCOPe (2.08) |
A | d3njra2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Rhodobacter capsulatus SB 1003 ) [TaxId: 272942 ], | SCOPe (2.08) |
B | d3njrb1 | Alpha and beta proteins (a/b) | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | automated matches | automated matches | (Rhodobacter capsulatus SB 1003 ) [TaxId: 272942 ], | SCOPe (2.08) |
B | d3njrb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Rhodobacter capsulatus SB 1003 ) [TaxId: 272942 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Precorrin-6Y methyltransferase (CbiT) | 8063395 | 4003082 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063396 | 3000118 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063396 | 3000118 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Methyltransf_11_4 | e3njrA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_4 | ECOD (1.6) |
B | Methyltransf_11_4 | e3njrB1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014008 | Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit | Family | |
IPR035996 | Tetrapyrrole methylase superfamily | Homologous Superfamily | |
IPR014777 | Tetrapyrrole methylase, subdomain 1 | Homologous Superfamily | |
IPR006365 | Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase | Family | |
IPR000878 | Tetrapyrrole methylase | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR012818 | Precorrin-6Y methyltransferase | Domain | |
IPR050714 | Cobalamin biosynthesis methyltransferase | Family |