3MP6
Complex Structure of Sgf29 and dimethylated H3K4
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07039 | e3mp6A3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF07039 | ECOD (1.6) |
A | PF01547 | e3mp6A1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF01547 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
A | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
PF07039 | SGF29 tudor-like domain (SGF29_Tudor) | SGF29 tudor-like domain | SAGA-associated factor 29 (SGF29) is involved in transcriptional regulation as a chromatin reader component of some histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes [1,2,3,4,5]. It specifically recognises ... | Domain | |
B [auth P] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006061 | Solute-binding family 1, conserved site | Conserved Site | |
IPR006060 | Maltose/Cyclodextrin ABC transporter, substrate-binding protein | Family | |
IPR006059 | Bacterial-type extracellular solute-binding protein | Family | |
IPR010750 | SGF29 tudor-like domain | Domain | |
IPR037802 | SAGA-associated factor 29 | Family | |
IPR047287 | SAGA-associated factor 29, second Tudor domain | Domain | |
IPR047288 | SAGA-associated factor 29, first Tudor domain | Domain | |
B [auth P] | IPR009072 | Histone-fold | Homologous Superfamily |
B [auth P] | IPR007125 | Histone H2A/H2B/H3 | Domain |
B [auth P] | IPR000164 | Histone H3/CENP-A | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth P] | MLY | Parent Component: LYS :  AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 |