Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyHHD-like 8091807 4004660 SCOP2 (2022-06-29)
ASCOP2 FamilyPDZ domain 8091809 4001790 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPAH2 domain-like 8091808 3000467 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPDZ domain-like 8091810 3000388 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APDZe3k1rA1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZECOD (1.6)
Aharmonin_Ne3k1rA2 A: alpha bundlesX: PAH2 domain (From Topology)H: PAH2 domain (From Topology)T: PAH2 domainF: harmonin_NECOD (1.6)
BSAM_1_1e3k1rB1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: SAM_1_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1160.20 Mainly Alpha Up-down Bundle Paired amphipathic helix 2 (pah2 repeat) CATH (4.3.0)
A2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (4.3.0)
B1.10.150.50 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21219Harmonin, N-terminal domain (USH1C_N)Harmonin, N-terminal domainThis domain is found at the N-terminal end of Harmonin from humans (USH1C) and similar proteins from vertebrates. Harmonin is a master scaffold in the assembly of the Usher protein complexes present in the inner ear and the retina. Defects in these p ...This domain is found at the N-terminal end of Harmonin from humans (USH1C) and similar proteins from vertebrates. Harmonin is a master scaffold in the assembly of the Usher protein complexes present in the inner ear and the retina. Defects in these proteins are related to a hereditary hearing-vision loss disease, Usher syndrome I (USH1). The N-terminal domain of USH1C, which precedes the first PDZ protein- binding domain (Pfam:PF00595), adopts a compact five-helix-bundle structure [1,3].
Domain
PF00595PDZ domain (PDZ)PDZ domainPDZ domains are found in diverse signaling proteins.Domain
PF00536SAM domain (Sterile alpha motif) (SAM_1)SAM domain (Sterile alpha motif)It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module ...It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Harmonin
Usher syndrome type-1G protein