3J3S
Structural dynamics of the MecA-ClpC complex revealed by cryo-EM
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2B Superfamily | Adapter protein MecA C-terminal domain-like | 8092883 | 3002637 | SCOP2B (2022-06-29) |
B [auth 2] | SCOP2B Superfamily | Adapter protein MecA C-terminal domain-like | 8092883 | 3002637 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | Adapter protein MecA C-terminal domain-like | 8092883 | 3002637 | SCOP2B (2022-06-29) |
F [auth 6] | SCOP2B Superfamily | Adapter protein MecA C-terminal domain-like | 8092883 | 3002637 | SCOP2B (2022-06-29) |
D [auth 4] | SCOP2B Superfamily | Adapter protein MecA C-terminal domain-like | 8092883 | 3002637 | SCOP2B (2022-06-29) |
E [auth 5] | SCOP2B Superfamily | Adapter protein MecA C-terminal domain-like | 8092883 | 3002637 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | Double Clp-N motif | 8082865 | 3001383 | SCOP2B (2022-06-29) |
I [auth C] | SCOP2B Superfamily | Double Clp-N motif | 8082865 | 3001383 | SCOP2B (2022-06-29) |
K [auth E] | SCOP2B Superfamily | Double Clp-N motif | 8082865 | 3001383 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | Double Clp-N motif | 8082865 | 3001383 | SCOP2B (2022-06-29) |
G [auth A] | SCOP2B Superfamily | Double Clp-N motif | 8082865 | 3001383 | SCOP2B (2022-06-29) |
J [auth D] | SCOP2B Superfamily | Double Clp-N motif | 8082865 | 3001383 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | MecA_C | e3j3s11 | A: a+b two layers | X: Alpha-beta plaits | H: Adapter protein mecA 2 C-terminal domain (From Topology) | T: Adapter protein mecA 2 C-terminal domain | F: MecA_C | ECOD (1.6) |
B [auth 2] | MecA_C | e3j3s21 | A: a+b two layers | X: Alpha-beta plaits | H: Adapter protein mecA 2 C-terminal domain (From Topology) | T: Adapter protein mecA 2 C-terminal domain | F: MecA_C | ECOD (1.6) |
C [auth 3] | MecA_C | e3j3s31 | A: a+b two layers | X: Alpha-beta plaits | H: Adapter protein mecA 2 C-terminal domain (From Topology) | T: Adapter protein mecA 2 C-terminal domain | F: MecA_C | ECOD (1.6) |
F [auth 6] | MecA_C | e3j3s61 | A: a+b two layers | X: Alpha-beta plaits | H: Adapter protein mecA 2 C-terminal domain (From Topology) | T: Adapter protein mecA 2 C-terminal domain | F: MecA_C | ECOD (1.6) |
D [auth 4] | MecA_C | e3j3s41 | A: a+b two layers | X: Alpha-beta plaits | H: Adapter protein mecA 2 C-terminal domain (From Topology) | T: Adapter protein mecA 2 C-terminal domain | F: MecA_C | ECOD (1.6) |
E [auth 5] | MecA_C | e3j3s51 | A: a+b two layers | X: Alpha-beta plaits | H: Adapter protein mecA 2 C-terminal domain (From Topology) | T: Adapter protein mecA 2 C-terminal domain | F: MecA_C | ECOD (1.6) |
H [auth B] | Clp_N | e3j3sB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
H [auth B] | ClpB_D2-small | e3j3sB3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
H [auth B] | chaperone_ClpB | e3j3sB2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
H [auth B] | Sigma54_activat | e3j3sB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
I [auth C] | Clp_N | e3j3sC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
I [auth C] | ClpB_D2-small | e3j3sC3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
I [auth C] | chaperone_ClpB | e3j3sC2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
I [auth C] | Sigma54_activat | e3j3sC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
K [auth E] | Clp_N | e3j3sE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
K [auth E] | ClpB_D2-small | e3j3sE3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
K [auth E] | chaperone_ClpB | e3j3sE2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
K [auth E] | Sigma54_activat | e3j3sE4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
L [auth F] | Clp_N | e3j3sF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
L [auth F] | ClpB_D2-small | e3j3sF3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
L [auth F] | chaperone_ClpB | e3j3sF4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
L [auth F] | Sigma54_activat | e3j3sF5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
G [auth A] | Clp_N | e3j3sA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
G [auth A] | ClpB_D2-small | e3j3sA3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
G [auth A] | chaperone_ClpB | e3j3sA2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
G [auth A] | Sigma54_activat | e3j3sA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
J [auth D] | Clp_N | e3j3sD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: double Clp-N | F: Clp_N | ECOD (1.6) |
J [auth D] | ClpB_D2-small | e3j3sD3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
J [auth D] | chaperone_ClpB | e3j3sD2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
J [auth D] | Sigma54_activat | e3j3sD4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05389 | Negative regulator of genetic competence (MecA) (MecA) | Negative regulator of genetic competence (MecA) | - | Family | |
PF10431 | C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) | C-terminal, D2-small domain, of ClpB protein | This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ... | Domain | |
PF17871 | AAA lid domain (AAA_lid_9) | AAA lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF02861 | Clp amino terminal domain, pathogenicity island component (Clp_N) | Clp amino terminal domain, pathogenicity island component | - | Family | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF07724 | AAA domain (Cdc48 subfamily) (AAA_2) | AAA domain (Cdc48 subfamily) | This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008681 | Negative regulator of genetic competence, MecA | Family | |
IPR038471 | MecA, C-terminal domain superfamily | Homologous Superfamily | |
IPR001270 | ClpA/B family | Family | |
IPR018368 | ClpA/B, conserved site 1 | Conserved Site | |
IPR041546 | ClpA/ClpB, AAA lid domain | Domain | |
IPR004176 | Clp, repeat (R) domain | Domain | |
IPR028299 | ClpA/B, conserved site 2 | Conserved Site | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR001943 | UVR domain | Domain | |
IPR019489 | Clp ATPase, C-terminal | Domain | |
IPR036628 | Clp, N-terminal domain superfamily | Homologous Superfamily | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |