3J26

The 3.5 A resolution structure of the Sputnik virophage by cryo-EM


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF07655e3j26A2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
AEUF07656e3j26A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
EEUF07655e3j26E2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
EEUF07656e3j26E1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
FEUF07655e3j26F2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
FEUF07656e3j26F1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
GEUF07655e3j26G1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
GEUF07656e3j26G2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
IEUF07655e3j26I1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
IEUF07656e3j26I2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
KEUF07655e3j26K2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
KEUF07656e3j26K1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
BEUF07655e3j26B2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
BEUF07656e3j26B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
CEUF07655e3j26C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
CEUF07656e3j26C2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
DEUF07655e3j26D1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
DEUF07656e3j26D2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
HEUF07655e3j26H2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
HEUF07656e3j26H1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
JEUF07655e3j26J2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
JEUF07656e3j26J1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
LEUF07655e3j26L1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
LEUF07656e3j26L2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
MEUF07655e3j26M2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07655ECOD (1.6)
MEUF07656e3j26M1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: EUF07656ECOD (1.6)
NEUF07675e3j26N1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in minor capsid protein (From Topology)T: Jelly-roll domain in minor capsid proteinF: EUF07675ECOD (1.6)
NEUF07675e3j26N2 A: a+b complex topologyX: Insertion domain of minor capsid protein (From Topology)H: Insertion domain of minor capsid protein (From Topology)T: Insertion domain of minor capsid proteinF: EUF07675ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
N2.60.120.1100 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF21915Sputnik virophage major capsid protein 1st domain (Sputnik_MCP_1st)Sputnik virophage major capsid protein 1st domainThis entry represents the first jelly roll domain in the sputnik virophage major capsid protein [1]. Sputnik is a dsDNA virus, referred to as a virophage, that is co-assembled with Mimivirus in the host amoeba. The capsid is organized into a T = 27 l ...This entry represents the first jelly roll domain in the sputnik virophage major capsid protein [1]. Sputnik is a dsDNA virus, referred to as a virophage, that is co-assembled with Mimivirus in the host amoeba. The capsid is organized into a T = 27 lattice in which there are 260 trimeric capsomers and 12 pentameric capsomers. The trimeric capsomers consist of three double jelly-roll major capsid proteins creating pseudohexameric capsomer symmetry.
Domain
A, B, C, D, E
PF22031Major capsid protein V20 C-terminal domain (MCP_V20_C)Major capsid protein V20 C-terminal domainThis is the C-terminal domain of major capsid protein V20. This domain folds into a beta-sandwich with a jelly-roll topology [1].Domain
PF21507Sputnik minor capsid protein V18/19 (V18-19)Sputnik minor capsid protein V18/19This entry includes Sputnik virus minor capsid proteins, such V19. Sputnik is a dsDNA virus, referred to as a virophage, that is coassembled with Mimivirus in the host amoeba [1]. It is an icosahedral virus and its capsid contains a major protein (V ...This entry includes Sputnik virus minor capsid proteins, such V19. Sputnik is a dsDNA virus, referred to as a virophage, that is coassembled with Mimivirus in the host amoeba [1]. It is an icosahedral virus and its capsid contains a major protein (V20) and two minor proteins (V18/19). Proteins in this entry have a single jelly-roll structure [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
capsid protein V20- -
Minor virion protein- - -