3GEH
Crystal structure of MnmE from Nostoc in complex with GDP, FOLINIC ACID and ZN
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | TrmE formyl-THF-binding domain-like | 8056829 | 4000140 | SCOP2 (2022-06-29) |
A | SCOP2 Family | 50S ribosome-binding GTPase-like | 8056831 | 4004038 | SCOP2 (2022-06-29) |
A | SCOP2 Family | TrmE connector domain-like | 8056833 | 4000307 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Folate-binding domain-like | 8056830 | 3000025 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ras-like P-loop GTPases | 8056832 | 3002022 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | TrmE connector domain-like | 8056834 | 3000076 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | MnmE_helical_1st | e3gehA3 | A: alpha bundles | X: Four-helical up-and-down bundle | H: TrmE connector domain (From Topology) | T: TrmE connector domain | F: MnmE_helical_1st | ECOD (1.6) |
A | TrmE_N | e3gehA4 | A: a+b two layers | X: Alpha-beta plaits | H: Aminomethyltransferase folate-binding domain (From Topology) | T: Aminomethyltransferase folate-binding domain | F: TrmE_N | ECOD (1.6) |
A | MnmE_helical_2nd | e3gehA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1360.120 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
A | 1.20.120.430 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | tRNA modification GTPase MnmE domain 2 | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12631 | MnmE helical domain (MnmE_helical) | MnmE helical domain | - | Family | |
PF10396 | GTP-binding protein TrmE N-terminus (TrmE_N) | GTP-binding protein TrmE N-terminus | - | Family | |
PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005225 | Small GTP-binding domain | Domain | |
IPR018948 | GTP-binding protein TrmE, N-terminal | Domain | |
IPR031168 | TrmE-type guanine nucleotide-binding domain | Domain | |
IPR004520 | tRNA modification GTPase MnmE | Family | |
IPR027368 | tRNA modification GTPase MnmE domain 2 | Homologous Superfamily | |
IPR006073 | GTP binding domain | Domain | |
IPR025867 | MnmE, helical domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR027266 | GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1 | Homologous Superfamily |