3DL8
Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Pre-protein crosslinking domain of SecA | 8040159 | 3001119 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helical scaffold and wing domains of SecA | 8040160 | 3001322 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040165 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040165 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Pre-protein crosslinking domain of SecA | 8040159 | 3001119 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helical scaffold and wing domains of SecA | 8040160 | 3001322 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Protein translocase subunit SecE-like | 8053304 | 3002174 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2 Family | Protein translocase subunit SecE-like | 8047939 | 4005885 | SCOP2 (2022-06-29) |
F [auth D] | SCOP2 Superfamily | Protein translocase subunit SecE-like | 8053304 | 3002174 | SCOP2 (2022-06-29) |
G [auth E] | SCOP2 Family | Preprotein translocase, SecG subunit -like | 8044985 | 4004237 | SCOP2 (2022-06-29) |
G [auth E] | SCOP2 Superfamily | Preprotein translocase subunit SecG-like | 8053303 | 3002175 | SCOP2 (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Preprotein translocase subunit SecG-like | 8053303 | 3002175 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SecA_PP_bind | e3dl8A10 | A: alpha arrays | X: Pre-protein crosslinking domain of SecA (From Topology) | H: Pre-protein crosslinking domain of SecA (From Topology) | T: Pre-protein crosslinking domain of SecA | F: SecA_PP_bind | ECOD (1.6) |
A | SecA_SW | e3dl8A11 | A: alpha complex topology | X: Helical scaffold and wing domains of SecA (From Topology) | H: Helical scaffold and wing domains of SecA (From Topology) | T: Helical scaffold and wing domains of SecA | F: SecA_SW | ECOD (1.6) |
A | SecA_DEAD | e3dl8A12 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: SecA_DEAD | ECOD (1.6) |
A | Helicase_C_10 | e3dl8A9 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_10 | ECOD (1.6) |
B | SecA_PP_bind | e3dl8B10 | A: alpha arrays | X: Pre-protein crosslinking domain of SecA (From Topology) | H: Pre-protein crosslinking domain of SecA (From Topology) | T: Pre-protein crosslinking domain of SecA | F: SecA_PP_bind | ECOD (1.6) |
B | SecA_SW | e3dl8B11 | A: alpha complex topology | X: Helical scaffold and wing domains of SecA (From Topology) | H: Helical scaffold and wing domains of SecA (From Topology) | T: Helical scaffold and wing domains of SecA | F: SecA_SW | ECOD (1.6) |
B | SecA_DEAD | e3dl8B12 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: SecA_DEAD | ECOD (1.6) |
B | Helicase_C_10 | e3dl8B9 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_10 | ECOD (1.6) |
C [auth G] | SecY | e3dl8G1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: SecY | ECOD (1.6) |
D [auth H] | SecY | e3dl8H2 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: SecY | ECOD (1.6) |
G [auth E] | SecG | e3dl8E1 | A: alpha bundles | X: Protein-export membrane protein secG (From Topology) | H: Protein-export membrane protein secG (From Topology) | T: Protein-export membrane protein secG | F: SecG | ECOD (1.6) |
H [auth F] | SecG | e3dl8F1 | A: alpha bundles | X: Protein-export membrane protein secG (From Topology) | H: Protein-export membrane protein secG (From Topology) | T: Protein-export membrane protein secG | F: SecG | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01043 | SecA preprotein cross-linking domain (SecA_PP_bind) | SecA preprotein cross-linking domain | The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domai ... | Domain | |
PF07516 | SecA Wing and Scaffold domain (SecA_SW) | SecA Wing and Scaffold domain | - | Family | |
PF21090 | SecA P-loop domain (P-loop_SecA) | SecA P-loop domain | SecA is the preprotein translocase ATPase subunit and a superfamily 2 (SF2) RNA helicase [4]. This entry corresponds to the second P-loop domain. | Domain | |
C [auth G], D [auth H] | PF00344 | SecY (SecY) | SecY | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |