3CVT
Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DNA-glycosylase | 8038321 | 3000905 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TATA-box binding protein-like | 8036364 | 3000705 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TATA-box binding protein-like | 8036364 | 3000705 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA-glycosylase | 8038321 | 3000905 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA-glycosylase | 8038321 | 3000905 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TATA-box binding protein-like | 8036364 | 3000705 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TATA-box binding protein-like | 8036364 | 3000705 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA-glycosylase | 8038321 | 3000905 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HhH-GPD | e3cvtA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD | ECOD (1.6) |
A | AlkA_N | e3cvtA2 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: AlkA_N | ECOD (1.6) |
B | HhH-GPD | e3cvtB1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD | ECOD (1.6) |
B | AlkA_N | e3cvtB2 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: AlkA_N | ECOD (1.6) |
C | HhH-GPD | e3cvtC1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD | ECOD (1.6) |
C | AlkA_N | e3cvtC2 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: AlkA_N | ECOD (1.6) |
D | HhH-GPD | e3cvtD1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD | ECOD (1.6) |
D | AlkA_N | e3cvtD2 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: AlkA_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06029 | AlkA N-terminal domain (AlkA_N) | AlkA N-terminal domain | - | Domain | |
PF00730 | HhH-GPD superfamily base excision DNA repair protein (HhH-GPD) | HhH-GPD superfamily base excision DNA repair protein | This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate [2]. This includes endonucle ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000035 | Alkylbase DNA glycosidase, conserved site | Conserved Site | |
IPR003265 | HhH-GPD domain | Domain | |
IPR023170 | Helix-hairpin-helix, base-excision DNA repair, C-terminal | Homologous Superfamily | |
IPR037046 | DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily | Homologous Superfamily | |
IPR051912 | Alkylbase DNA Glycosylase/Transcriptional Activator | Family | |
IPR010316 | DNA-3-methyladenine glycosylase AlkA, N-terminal | Domain | |
IPR011257 | DNA glycosylase | Homologous Superfamily |