3A9S

X-ray Structure of Bacillus pallidus D-Arabinose Isomerase Complex with Glycerol

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3a9sa2	All beta proteins	Reductase/isomerase/elongation factor common domain	FucI/AraA C-terminal domain-like	automated matches	automated matches	(Aeribacillus pallidus ) [TaxId: 33936 ],	SCOPe (2.08)
A	d3a9sa1	Alpha and beta proteins (a/b)	FucI/AraA N-terminal and middle domains	FucI/AraA N-terminal and middle domains	automated matches	automated matches	(Aeribacillus pallidus ) [TaxId: 33936 ],	SCOPe (2.08)
B	d3a9sb2	All beta proteins	Reductase/isomerase/elongation factor common domain	FucI/AraA C-terminal domain-like	automated matches	automated matches	(Aeribacillus pallidus ) [TaxId: 33936 ],	SCOPe (2.08)
B	d3a9sb1	Alpha and beta proteins (a/b)	FucI/AraA N-terminal and middle domains	FucI/AraA N-terminal and middle domains	automated matches	automated matches	(Aeribacillus pallidus ) [TaxId: 33936 ],	SCOPe (2.08)
C	d3a9sc2	All beta proteins	Reductase/isomerase/elongation factor common domain	FucI/AraA C-terminal domain-like	automated matches	automated matches	(Aeribacillus pallidus ) [TaxId: 33936 ],	SCOPe (2.08)
C	d3a9sc1	Alpha and beta proteins (a/b)	FucI/AraA N-terminal and middle domains	FucI/AraA N-terminal and middle domains	automated matches	automated matches	(Aeribacillus pallidus ) [TaxId: 33936 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Fucose_iso_C	e3a9sA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Fucose_iso_C	ECOD (1.6)
A	Fucose_iso_N1	e3a9sA3	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: L-fucose isomerase, N-terminal and second domains	F: Fucose_iso_N1	ECOD (1.6)
A	Fucose_iso_N2	e3a9sA2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: L-fucose isomerase, N-terminal and second domains	F: Fucose_iso_N2	ECOD (1.6)
B	Fucose_iso_C	e3a9sB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Fucose_iso_C	ECOD (1.6)
B	Fucose_iso_N1	e3a9sB3	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: L-fucose isomerase, N-terminal and second domains	F: Fucose_iso_N1	ECOD (1.6)
B	Fucose_iso_N2	e3a9sB2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: L-fucose isomerase, N-terminal and second domains	F: Fucose_iso_N2	ECOD (1.6)
C	Fucose_iso_C	e3a9sC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Fucose_iso_C	ECOD (1.6)
C	Fucose_iso_N1	e3a9sC3	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: L-fucose isomerase, N-terminal and second domains	F: Fucose_iso_N1	ECOD (1.6)
C	Fucose_iso_N2	e3a9sC2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: L-fucose isomerase, N-terminal and second domains	F: Fucose_iso_N2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1070	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.275.10	Alpha Beta	3-Layer(aba) Sandwich	L-fucose Isomerase	Chain A, domain 2	CATH (4.3.0)
A	3.20.14.10	Alpha Beta	Alpha-Beta Barrel	L-fucose Isomerase	Chain A, domain 3	CATH (4.3.0)
B	3.40.50.1070	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.275.10	Alpha Beta	3-Layer(aba) Sandwich	L-fucose Isomerase	Chain A, domain 2	CATH (4.3.0)
B	3.20.14.10	Alpha Beta	Alpha-Beta Barrel	L-fucose Isomerase	Chain A, domain 3	CATH (4.3.0)
C	3.40.50.1070	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.275.10	Alpha Beta	3-Layer(aba) Sandwich	L-fucose Isomerase	Chain A, domain 2	CATH (4.3.0)
C	3.20.14.10	Alpha Beta	Alpha-Beta Barrel	L-fucose Isomerase	Chain A, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF07881	L-fucose isomerase, first N-terminal domain (Fucose_iso_N1)	L-fucose isomerase, first N-terminal domain	-	Family
A, B, C	PF07882	L-fucose isomerase, second N-terminal domain (Fucose_iso_N2)	L-fucose isomerase, second N-terminal domain	-	Family
A, B, C	PF02952	L-fucose isomerase, C-terminal domain (Fucose_iso_C)	L-fucose isomerase, C-terminal domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	D-arabinose isomerase	isomerase activity intramolecular oxidoreductase activity, interconverting aldoses and ketoses intramolecular oxidoreductase activity arabinose isomerase activity catalytic activity cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding L-fucose isomerase activity	monosaccharide metabolic process carbohydrate metabolic process catabolic process hexose catabolic process carbohydrate catabolic process hexose metabolic process primary metabolic process fucose metabolic process L-fucose metabolic process fucose catabolic process L-fucose catabolic process small molecule metabolic process metabolic process monosaccharide catabolic process monosaccharide metabolic process carbohydrate metabolic process catabolic process hexose catabolic process carbohydrate catabolic process hexose metabolic process primary metabolic process fucose metabolic process L-fucose metabolic process fucose catabolic process L-fucose catabolic process small molecule metabolic process metabolic process monosaccharide catabolic process small molecule catabolic process arabinose metabolic process arabinose catabolic process D-arabinose catabolic process D-arabinose metabolic process pentose metabolic process pentose catabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR038393	L-fucose isomerase, domain 3 superfamily	Homologous Superfamily
A, B, C	IPR005763	L-fucose isomerase	Family
A, B, C	IPR012889	L-fucose isomerase, N-terminal-2	Domain
A, B, C	IPR009015	L-fucose isomerase, N-terminal/central domain superfamily	Homologous Superfamily
A, B, C	IPR012888	L-fucose isomerase, N-terminal-1	Domain
A, B, C	IPR015888	L-fucose isomerase, C-terminal	Domain
A, B, C	IPR038391	L-fucose isomerase, domain 1 superfamily	Homologous Superfamily
A, B, C	IPR038392	L-fucose isomerase, domain 2 superfamily	Homologous Superfamily
A, B, C	IPR004216	L-fucose/L-arabinose isomerase, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.