3A1P
Structure of Ribosome maturation protein RimM and Ribosomal protein S19
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RimM | e3a1pA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: RimM | ECOD (1.6) |
A | PRC | e3a1pA2 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PRC | ECOD (1.6) |
C | RimM | e3a1pC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: RimM | ECOD (1.6) |
C | PRC | e3a1pC2 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PRC | ECOD (1.6) |
B | Ribosomal_S19 | e3a1pB1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
D | Ribosomal_S19 | e3a1pD1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.30.60 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
A | 2.30.30.240 | Mainly Beta | Roll | SH3 type barrels. | PRC-barrel domain | CATH (4.3.0) |
C | 2.40.30.60 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
C | 2.30.30.240 | Mainly Beta | Roll | SH3 type barrels. | PRC-barrel domain | CATH (4.3.0) |
B | 3.30.860.10 | Alpha Beta | 2-Layer Sandwich | 30s Ribosomal Protein S19 | Chain A | CATH (4.3.0) |
D | 3.30.860.10 | Alpha Beta | 2-Layer Sandwich | 30s Ribosomal Protein S19 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01782 | RimM N-terminal domain (RimM) | RimM N-terminal domain | The RimM protein is essential for efficient processing of 16S rRNA [1]. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [1]. This N-terminal domain is found associated with a ... | Domain | |
PF05239 | PRC-barrel domain (PRC) | PRC-barrel domain | The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036976 | RimM, N-terminal domain superfamily | Homologous Superfamily | |
IPR002676 | RimM, N-terminal | Domain | |
IPR011961 | Ribosome maturation factor RimM | Family | |
IPR009000 | Translation protein, beta-barrel domain superfamily | Homologous Superfamily | |
IPR011033 | PRC-barrel-like superfamily | Homologous Superfamily | |
IPR027275 | PRC-barrel domain | Domain | |
IPR002222 | Small ribosomal subunit protein uS19 | Family | |
IPR005732 | Small ribosomal subunit protein uS19, bacterial-type | Family | |
IPR023575 | Small ribosomal subunit protein uS19, superfamily | Homologous Superfamily | |
IPR020934 | Small ribosomal subunit protein uS19, conserved site | Conserved Site |