2ZM5
Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Simibi-like P-loop NTPases | 8093069 | 3002018 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Simibi-like P-loop NTPases | 8093069 | 3002018 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Simibi-like P-loop NTPases | 8093069 | 3002018 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Simibi-like P-loop NTPases | 8093069 | 3002018 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IPPT | e2zm5A2 | A: alpha arrays | X: tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain (From Topology) | H: tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain (From Topology) | T: tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | F: IPPT | ECOD (1.6) |
A | IPT | e2zm5A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: IPT | ECOD (1.6) |
B | IPPT | e2zm5B2 | A: alpha arrays | X: tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain (From Topology) | H: tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain (From Topology) | T: tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | F: IPPT | ECOD (1.6) |
B | IPT | e2zm5B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: IPT | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.20.140 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | CATH (4.3.0) | |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01715 | IPP transferase (IPPT) | IPP transferase | This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [2]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039657 | Dimethylallyltransferase | Family | |
IPR018022 | IPP transferase | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |