2YVL
Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | tRNA(1-methyladenosine) methyltransferase, catalytic subunit-like | 8083872 | 4003408 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8083873 | 3000118 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Transcription elongation factor, GreA/GreB-like | 8090669 | 3002449 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090669 | 3002449 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8083873 | 3000118 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090669 | 3002449 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8083873 | 3000118 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8083873 | 3000118 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090669 | 3002449 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GCD14_N_1 | e2yvlA1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: GCD14_N_1 | ECOD (1.6) |
A | Methyltransf_11_2,Gcd10p_2nd | e2yvlA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_2,Gcd10p_2nd | ECOD (1.6) |
B | GCD14_N_1 | e2yvlB1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: GCD14_N_1 | ECOD (1.6) |
B | Methyltransf_11_2,Gcd10p_2nd | e2yvlB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_2,Gcd10p_2nd | ECOD (1.6) |
C | GCD14_N_1 | e2yvlC1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: GCD14_N_1 | ECOD (1.6) |
C | Methyltransf_11_2,Gcd10p_2nd | e2yvlC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_2,Gcd10p_2nd | ECOD (1.6) |
D | GCD14_N_1 | e2yvlD1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: GCD14_N_1 | ECOD (1.6) |
D | Methyltransf_11_2,Gcd10p_2nd | e2yvlD2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_2,Gcd10p_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.330.20 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B | 3.10.330.20 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
C | 3.10.330.20 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
C | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
D | 3.10.330.20 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
D | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014816 | tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR049470 | tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61, C-terminal | Domain |