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Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 231) in complex with a camelid VHH. External Resource: Annotation Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2 Family Retrovirus capsid protein C-terminal domain 8101662 4000865 SCOP2 (2022-06-29) A SCOP2 Superfamily Retrovirus capsid dimerization domain-like 8101663 3001819 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A PF19317 e2xt1A1 A: alpha bundles X: Retrovirus capsid protein H: Retrovirus capsid protein-C (From Topology) T: Retrovirus capsid protein-C F: PF19317 ECOD (1.6) B PF07686 e2xt1B1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07686 ECOD (1.6)
Chain Protein Name Description Organism Name Gene Allele Name(s) Domain Name(s) Receptor Type Receptor Description Provenance Source CAMELID VHH 9 VH Vicugna pacos (alpaca) IGHV3S4*01, IGHJ4*01 V-DOMAIN VH IG (VH) IMGT (202416-0)
Chain Chain Class Chain Subclass Chain Type Antigen Name(s) Provenance Source Heavy Chain IGHV1 - gag polyprotein SAbDab (2024-04-26)
Chains Accession Name Description Comments Source PF19317 Gag protein p24 C-terminal domain (Gag_p24_C) Gag protein p24 C-terminal domain p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Domain
Chains Polymer Molecular Function Biological Process Cellular Component GAG POLYPROTEIN - CAMELID VHH 9 - - -