2VYR

Structure of human MDM4 N-terminal domain bound to a single domain antibody

Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species
A	d2vyra_	All alpha proteins	SWIB/MDM2 domain	SWIB/MDM2 domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
B	d2vyrb_	All alpha proteins	SWIB/MDM2 domain	SWIB/MDM2 domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
C	d2vyrc_	All alpha proteins	SWIB/MDM2 domain	SWIB/MDM2 domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
D	d2vyrd_	All alpha proteins	SWIB/MDM2 domain	SWIB/MDM2 domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
E	d2vyre_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
F	d2vyrf_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
G	d2vyrg_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
H	d2vyrh_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
I	d2vyri_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
J	d2vyrj_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
K	d2vyrk_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]
L	d2vyrl_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ]

Domain Annotation: CATH CATH Database (version 4.2.0) Homepage

Chain	Domain	Class	Architecture	Topology	Homology
A	1.10.245.10	Mainly Alpha	Orthogonal Bundle	MDM2	SWIB/MDM2 domain
B	1.10.245.10	Mainly Alpha	Orthogonal Bundle	MDM2	SWIB/MDM2 domain
C	1.10.245.10	Mainly Alpha	Orthogonal Bundle	MDM2	SWIB/MDM2 domain
D	1.10.245.10	Mainly Alpha	Orthogonal Bundle	MDM2	SWIB/MDM2 domain
E	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
F	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
G	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
H	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
I	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
J	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
K	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
L	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Identifier	Description	Comments	Source
A, B, C, D	PF02201	SWIB/MDM2 domain (SWIB)	SWIB/MDM2 domain	This family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. Thi ...	This family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2 [2].	Domain
A, B, C, D	PF00641	Zn-finger in Ran binding protein and others (zf-RanBP)	Zn-finger in Ran binding protein and others	-	Domain

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	MDM4 PROTEIN	binding protein binding enzyme binding zinc ion binding ion binding cation binding metal ion binding transition metal ion binding	cell population proliferation negative regulation of cell population proliferation cellular process regulation of cell population proliferation negative regulation of biological process negative regulation of cellular process regulation of biological process regulation of cellular process biological regulation regulation of protein stability protein stabilization regulation of biological quality cellular component organization cellular component assembly protein-containing complex subunit organization cellular component biogenesis protein-containing complex assembly cellular component organization or biogenesis	intracellular anatomical structure nucleus nucleoplasm membrane-enclosed lumen nuclear lumen organelle membrane-bounded organelle intracellular organelle intracellular membrane-bounded organelle organelle lumen intracellular organelle lumen cellular anatomical entity
E, F, G, H, I, J, K, L	HUMAN SINGLE DOMAIN ANTIBODY	none	none	none

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.