2RKJ
Cocrystal structure of a tyrosyl-tRNA synthetase splicing factor with a group I intron RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
I [auth A] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
K [auth E] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
M [auth I] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
N [auth J] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
O [auth M] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
P [auth N] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070075 | 3001541 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth A] | tRNA-synt_1b_1 | e2rkjA1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
J [auth B] | tRNA-synt_1b_1 | e2rkjB1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
K [auth E] | tRNA-synt_1b_1 | e2rkjE1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
L [auth F] | tRNA-synt_1b_1 | e2rkjF1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
M [auth I] | tRNA-synt_1b_1 | e2rkjI1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
N [auth J] | tRNA-synt_1b_1 | e2rkjJ1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
O [auth M] | tRNA-synt_1b_1 | e2rkjM1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
P [auth N] | tRNA-synt_1b_1 | e2rkjN1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00579 | tRNA synthetases class I (W and Y) (tRNA-synt_1b) | tRNA synthetases class I (W and Y) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site | Conserved Site | |
IPR032005 | Tyrosyl-tRNA synthetase, C-terminal | Domain | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily | |
IPR002307 | Tyrosine-tRNA ligase | Family | |
IPR002305 | Aminoacyl-tRNA synthetase, class Ic | Family | |
IPR024088 | Tyrosine-tRNA ligase, bacterial-type | Family | |
IPR036986 | RNA-binding S4 domain superfamily | Homologous Superfamily |