2QV7
Crystal Structure of Diacylglycerol Kinase DgkB in complex with ADP and Mg
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2qv7a1 | Multi-domain proteins (alpha and beta) | NAD kinase/diacylglycerol kinase-like | NAD kinase/diacylglycerol kinase-like | Diacylglycerol kinase-like | Diacylglycerol kinase DgkB | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
A | d2qv7a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DAGK_acc | e2qv7A1 | A: beta sandwiches | X: NAD kinase beta sandwich domain-like (From Topology) | H: NAD kinase beta sandwich domain-like (From Topology) | T: NAD kinase beta sandwich domain-like | F: DAGK_acc | ECOD (1.6) |
A | DAGK_cat | e2qv7A2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Phosphofructokinase N-terminal domain | F: DAGK_cat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.10330 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Probable inorganic polyphosphate/atp-NAD kinase | CATH (4.3.0) |
A | 2.60.200.40 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19279 | YegS C-terminal NAD kinase beta sandwich-like domain (YegS_C) | YegS C-terminal NAD kinase beta sandwich-like domain | This entry represents the C-terminal domain found in the YegS protein [1,2]. It is related to the beta sandwich domain of NAD kinases. The structure of YegS reveals a two-domain protein with the active site crevice found between the two domains. The ... | Domain | |
PF00781 | Diacylglycerol kinase catalytic domain (DAGK_cat) | Diacylglycerol kinase catalytic domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045540 | YegS/DAGK, C-terminal domain | Domain | |
IPR050187 | Lipid Phosphate Formation and Regulation | Family | |
IPR017438 | Inorganic polyphosphate/ATP-NAD kinase, N-terminal | Homologous Superfamily | |
IPR016064 | NAD kinase/diacylglycerol kinase-like domain superfamily | Homologous Superfamily | |
IPR005218 | Diacylglycerol/lipid kinase | Family | |
IPR001206 | Diacylglycerol kinase, catalytic domain | Domain |