2QLV
Crystal structure of the heterotrimer core of the S. cerevisiae AMPK homolog SNF1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ssp2 C-terminal domain-like | 8023706 | 4002378 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | KA1-like | 8036086 | 3001856 | SCOP2 (2022-06-29) |
B | SCOP2 Family | AMPKBI-like | 8023709 | 4001835 | SCOP2 (2022-06-29) |
B | SCOP2 Family | AMPK-beta glycogen-binding domain-like | 8055088 | 4007532 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | AMPKBI-like | 8036089 | 3000446 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Starch-binding domain-like | 8055089 | 3000816 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Starch-binding domain-like | 8055089 | 3000816 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | CBS-domain pair | 8043348 | 3000123 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | CBS-domain pair | 8043348 | 3000123 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AdenylateSensor_1 | e2qlvA1 | A: a+b two layers | X: TBP-like | H: Kinase associated domain 1, KA1 (From Topology) | T: Kinase associated domain 1, KA1 | F: AdenylateSensor_1 | ECOD (1.6) |
D | AdenylateSensor_1 | e2qlvD1 | A: a+b two layers | X: TBP-like | H: Kinase associated domain 1, KA1 (From Topology) | T: Kinase associated domain 1, KA1 | F: AdenylateSensor_1 | ECOD (1.6) |
B | AMPK1_CBM | e2qlvB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: AMPK1_CBM | ECOD (1.6) |
B | AMPKBI | e2qlvB2 | A: a+b two layers | X: AMPKBI-like (From Topology) | H: AMPKBI-like (From Topology) | T: AMPKBI-like | F: AMPKBI | ECOD (1.6) |
E | AMPK1_CBM | e2qlvE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: AMPK1_CBM | ECOD (1.6) |
E | AMPKBI | e2qlvE2 | A: a+b two layers | X: AMPKBI-like (From Topology) | H: AMPKBI-like (From Topology) | T: AMPKBI-like | F: AMPKBI | ECOD (1.6) |
C | IMPDH_2nd_1 | e2qlvC4 | A: a+b duplicates or obligate multimers | X: CBS-domain (From Topology) | H: CBS-domain (From Topology) | T: CBS-domain | F: IMPDH_2nd_1 | ECOD (1.6) |
F | IMPDH_2nd_1 | e2qlvF4 | A: a+b duplicates or obligate multimers | X: CBS-domain (From Topology) | H: CBS-domain (From Topology) | T: CBS-domain | F: IMPDH_2nd_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.310.80 | Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Kinase associated domain 1, KA1 | CATH (4.3.0) |
D | 3.30.310.80 | Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Kinase associated domain 1, KA1 | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.20.25.290 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E | 2.20.25.290 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
C | 3.10.580.10 | Alpha Beta | Roll | CBS-domain | CBS-domain | CATH (4.3.0) |
F | 3.10.580.10 | Alpha Beta | Roll | CBS-domain | CBS-domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16579 | Adenylate sensor of SNF1-like protein kinase (AdenylateSensor) | Adenylate sensor of SNF1-like protein kinase | AdenylateSensor is a family found at the C-terminus of SNF1-like protein kinases snf other protein-kinases [1]. | Domain | |
PF16561 | Glycogen recognition site of AMP-activated protein kinase (AMPK1_CBM) | Glycogen recognition site of AMP-activated protein kinase | - | Family | |
PF00571 | CBS domain (CBS) | CBS domain | CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017441 | Protein kinase, ATP binding site | Binding Site | |
IPR013896 | Carbon catabolite-derepressing protein kinase, ubiquitin-associated domain | Domain | |
IPR032270 | AMPK, C-terminal adenylate sensor domain | Domain | |
IPR000719 | Protein kinase domain | Domain | |
IPR028375 | KA1 domain/Ssp2, C-terminal | Homologous Superfamily | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR008271 | Serine/threonine-protein kinase, active site | Active Site | |
IPR032640 | AMP-activated protein kinase, glycogen-binding domain | Domain | |
IPR037256 | ASC domain superfamily | Homologous Superfamily | |
IPR006828 | Association with the SNF1 complex (ASC) domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR050827 | CRP1/MDG1 DNA-binding & kinase subunit | Family | |
IPR046342 | CBS domain superfamily | Homologous Superfamily | |
IPR050511 | AMP-activated protein kinase gamma/SDS23 families | Family | |
IPR000644 | CBS domain | Domain |