2OZ4
Structural Plasticity in IgSF Domain 4 of ICAM-1 Mediates Cell Surface Dimerization
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2oz4a1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth L] | d2oz4l2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth L] | d2oz4l1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C [auth H] | d2oz4h_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | I-set_4 | e2oz4A3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_4 | ECOD (1.6) |
A | C1-set_like | e2oz4A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_like | ECOD (1.6) |
B [auth L] | C1-set_4 | e2oz4L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B [auth L] | V-set | e2oz4L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth H] | V-set_8 | e2oz4H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth H] | C1-set_1 | e2oz4H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth L] | Fab CA7 | L-KAPPA | Mus musculus (house mouse) | IGKV5-48*01, IGKJ4*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
C [auth H] | Fab CA7 | VH-CH1 | Mus musculus (house mouse) | IGHV1-26*01, IGHJ3*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth L] | Light Chain | IGKV5 | Kappa | intercellular adhesion molecule 1 | SAbDab (2024-09-13) |
C [auth H] | Heavy Chain | IGHV1 | - | intercellular adhesion molecule 1 | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21146 | ICAM-1/3/5, D2 domain (ICAM1_3_5_D2) | ICAM-1/3/5, D2 domain | ICAMs promote intercellular adhesion and are important in inflammation, immune responses and in intracellular signalling events [1-5]. They belong to the Ig-like superfamily and differ in their cell expression patterns and numbers of Ig-like domains ... | Domain | |
PF13895 | Immunoglobulin domain (Ig_2) | Immunoglobulin domain | This domain contains immunoglobulin-like domains. | Domain | |
C [auth H] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR048679 | Intercellular adhesion molecule 1/3/5, D2 domain | Domain | |
IPR003599 | Immunoglobulin domain subtype | Domain | |
IPR047012 | Intercellular adhesion molecule/vascular cell adhesion molecule | Family | |
IPR003988 | Intercellular adhesion molecule | Domain | |
IPR003987 | Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR013768 | Intercellular adhesion molecule, N-terminal | Domain | |
C [auth H] | IPR050199 | Immunoglobulin Heavy Variable | Family |
C [auth H] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
C [auth H] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
C [auth H] | IPR013106 | Immunoglobulin V-set domain | Domain |
C [auth H] | IPR003599 | Immunoglobulin domain subtype | Domain |
C [auth H] | IPR007110 | Immunoglobulin-like domain | Domain |