2OV9

Crystal structure of protein RHA08564, thioesterase superfamily protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ov9a1	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	PaaI/YdiI-like	Hypothetical protein RHA1_ro05818	(Rhodococcus jostii RHA1 ) [TaxId: 101510 ],	SCOPe (2.08)
B	d2ov9b_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	PaaI/YdiI-like	Hypothetical protein RHA1_ro05818	(Rhodococcus jostii RHA1 ) [TaxId: 101510 ],	SCOPe (2.08)
C	d2ov9c_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	PaaI/YdiI-like	Hypothetical protein RHA1_ro05818	(Rhodococcus jostii RHA1 ) [TaxId: 101510 ],	SCOPe (2.08)
D	d2ov9d_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	PaaI/YdiI-like	Hypothetical protein RHA1_ro05818	(Rhodococcus jostii RHA1 ) [TaxId: 101510 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PaaI/YdiI-like	8022822	4000624	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8035202	3000149	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8035202	3000149	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8035202	3000149	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8035202	3000149	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF08157	e2ov9A1	A: alpha bundles	X: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	H: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	T: Hypothetical protein RHA1_ro05818 N-terminal helical domain	F: EUF08157	ECOD (1.6)
A	4HBT	e2ov9A3	A: a+b two layers	X: Thioesterase/thiol ester dehydrase-isomerase-like	H: Thioesterase/thiol ester dehydrase-isomerase (From Topology)	T: Thioesterase/thiol ester dehydrase-isomerase	F: 4HBT	ECOD (1.6)
B	EUF08157	e2ov9B1	A: alpha bundles	X: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	H: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	T: Hypothetical protein RHA1_ro05818 N-terminal helical domain	F: EUF08157	ECOD (1.6)
B	4HBT	e2ov9B3	A: a+b two layers	X: Thioesterase/thiol ester dehydrase-isomerase-like	H: Thioesterase/thiol ester dehydrase-isomerase (From Topology)	T: Thioesterase/thiol ester dehydrase-isomerase	F: 4HBT	ECOD (1.6)
C	EUF08157	e2ov9C1	A: alpha bundles	X: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	H: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	T: Hypothetical protein RHA1_ro05818 N-terminal helical domain	F: EUF08157	ECOD (1.6)
C	4HBT	e2ov9C2	A: a+b two layers	X: Thioesterase/thiol ester dehydrase-isomerase-like	H: Thioesterase/thiol ester dehydrase-isomerase (From Topology)	T: Thioesterase/thiol ester dehydrase-isomerase	F: 4HBT	ECOD (1.6)
D	EUF08157	e2ov9D2	A: alpha bundles	X: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	H: Hypothetical protein RHA1_ro05818 N-terminal helical domain (From Topology)	T: Hypothetical protein RHA1_ro05818 N-terminal helical domain	F: EUF08157	ECOD (1.6)
D	4HBT	e2ov9D3	A: a+b two layers	X: Thioesterase/thiol ester dehydrase-isomerase-like	H: Thioesterase/thiol ester dehydrase-isomerase (From Topology)	T: Thioesterase/thiol ester dehydrase-isomerase	F: 4HBT	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
A	1.20.58.350	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
B	1.20.58.350	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
C	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
C	1.20.58.350	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
D	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
D	1.20.58.350	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03061	Thioesterase superfamily (4HBT)	Thioesterase superfamily	This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas ...	This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters.	Domain
A, B, C, D	PF20859	Hypothetical protein RHA1_ro05818, N-terminal helical domain (RHA1_ro05818_N)	Hypothetical protein RHA1_ro05818, N-terminal helical domain	This domain is found at the N terminus of Hypothetical protein RHA1_ro05818 from Rhodococcus jostii (Swiss:Q0S4E1). This protein is thought to be a thioesterase involved in the metabolism of cholate [1]. This protein has a 4HBT domain (Pfam:PF03061) ...	This domain is found at the N terminus of Hypothetical protein RHA1_ro05818 from Rhodococcus jostii (Swiss:Q0S4E1). This protein is thought to be a thioesterase involved in the metabolism of cholate [1]. This protein has a 4HBT domain (Pfam:PF03061) at the C-terminal. The N-terminal domain shows an helical fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Hypothetical protein	-	organic substance metabolic process primary metabolic process metabolic process lipid metabolic process	cell periphery plasma membrane membrane cellular anatomical entity intracellular anatomical structure cytoplasm cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR048654	RHA1_ro05818, N-terminal helical domain	Domain
A, B, C, D	IPR029069	HotDog domain superfamily	Homologous Superfamily
A, B, C, D	IPR006683	Thioesterase domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.