2KWK
Solution structures of the double PHD fingers of human transcriptional protein DPF3b bound to a H3 peptide wild type
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | PHD | e2kwkA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR009072 | Histone-fold | Homologous Superfamily |
A [auth B] | IPR007125 | Histone H2A/H2B/H3 | Domain |
A [auth B] | IPR000164 | Histone H3/CENP-A | Family |
B [auth A] | IPR001965 | Zinc finger, PHD-type | Domain |
B [auth A] | IPR013087 | Zinc finger C2H2-type | Domain |
B [auth A] | IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily |
B [auth A] | IPR051580 | Zinc finger and chromatin remodeling-associated protein | Family |
B [auth A] | IPR025750 | DPF1-3, N-terminal domain | Domain |
B [auth A] | IPR019787 | Zinc finger, PHD-finger | Domain |
B [auth A] | IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily |
B [auth A] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |