2HMA
The Crystal Structure of tRNA (5-Methylaminomethyl-2-Thiouridylate)-Methyltransferase TrmU from Streptococcus pneumoniae
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | tRNA thiouridylase NM domain-like | 8051039 | 4007171 | SCOP2 (2022-06-29) |
A | SCOP2 Family | tRNA thiouridylase C-terminal domain-like | 8091665 | 4007751 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleotidylyl transferase | 8051817 | 3001541 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | EF-Tu post-G domain-like | 8051818 | 3002024 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | GS N-terminal domain-like | 8051821 | 3000408 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | tRNA_Me_trans_3rd | e2hmaA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: tRNA_Me_trans_3rd | ECOD (1.6) |
A | tRNA_Me_trans_2nd | e2hmaA2 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: tRNA_Me_trans_2nd | ECOD (1.6) |
A | NAD_synthase | e2hmaA3 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: NAD_synthase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A | 2.30.30.280 | Mainly Beta | Roll | SH3 type barrels. | Adenine nucleotide alpha hydrolases-like domains | CATH (4.3.0) |
A | 2.40.30.10 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03054 | tRNA methyl transferase HUP domain (tRNA_Me_trans) | tRNA methyl transferase HUP domain | This family represents the N-terminal HUP domain in tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some ... | Domain | |
PF20258 | Aminomethyltransferase beta-barrel domain (tRNA_Me_trans_C) | Aminomethyltransferase beta-barrel domain | This domain is found at the C-terminus of tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs [1]. | Domain | |
PF20259 | tRNA methyl transferase PRC-barrel domain (tRNA_Me_trans_M) | tRNA methyl transferase PRC-barrel domain | This family represents a central PRC-barrel domain in tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023382 | tRNA-specific 2-thiouridylase MnmA-like, central domain superfamily | Homologous Superfamily | |
IPR046885 | tRNA-specific 2-thiouridylase MnmA-like, C-terminal domain | Domain | |
IPR004506 | tRNA-specific 2-thiouridylase | Family | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily | |
IPR046884 | tRNA-specific 2-thiouridylase MnmA-like, central domain | Domain |