Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2h3ia_ All alpha proteins Retroviral matrix proteins Retroviral matrix proteins Immunodeficiency virus matrix proteins automated matches (Human immunodeficiency virus 1 ) [TaxId: 11676 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRetroviral matrix proteins 8072649 3000562 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGag_p17e2h3iA1 A: alpha arraysX: Retroviral matrix proteins (From Topology)H: Retroviral matrix proteins (From Topology)T: Retroviral matrix proteinsF: Gag_p17ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.150.90 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00540gag gene protein p17 (matrix protein) (Gag_p17)gag gene protein p17 (matrix protein)The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Gag polyprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036397Ribonuclease H superfamilyHomologous Superfamily
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR001995Peptidase A2A, retrovirus, catalyticDomain
IPR001878Zinc finger, CCHC-typeDomain
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
IPR018061RetropepsinsDomain
IPR010661Reverse transcriptase thumbDomain
IPR002156Ribonuclease H domainDomain
IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
IPR003308Integrase, N-terminal zinc-binding domainDomain
IPR001584Integrase, catalytic coreDomain
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
IPR010999Retroviral matrix proteinHomologous Superfamily
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
IPR001969Aspartic peptidase, active siteActive Site
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
IPR017856Integrase-like, N-terminalHomologous Superfamily
IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR001037Integrase, C-terminal, retroviralDomain
IPR034170Retropepsin-like catalytic domainDomain
IPR000477Reverse transcriptase domainDomain
IPR010659Reverse transcriptase connectionDomain
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily