2GRN
Crystal Structure of human RanGAP1-Ubc9
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2grna_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | Ubiquitin conjugating enzyme, UBC | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2grnb1 | All alpha proteins | alpha-alpha superhelix | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UQ_con | e2grnA1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B | RanGAP1_C | e2grnB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ras GEF (From Topology) | T: Ras GEF | F: RanGAP1_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
B | 1.25.40.200 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ran-GTPase activating protein 1, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050113 | Ubiquitin-conjugating enzyme | Family | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain | |
IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site | |
IPR036720 | Ran-GTPase activating protein 1, C-terminal domain superfamily | Homologous Superfamily | |
IPR027038 | Ran GTPase-activating protein | Family | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR009109 | Ran-GTPase activating protein 1, C-terminal | Domain |