Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyAmyloid beta a4 protein copper binding domain (domain 2) 8028720 4000572 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAmyloid beta a4 protein copper binding domain (domain 2) 8041099 3000618 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyAmyloid beta a4 protein copper binding domain (domain 2) 8041099 3000618 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAPP_Cu_bde2fklA1 A: a+b two layersX: Dodecin subunit-likeH: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology)T: Amyloid beta a4 protein copper binding domain (domain 2)F: APP_Cu_bdECOD (1.6)
BAPP_Cu_bde2fklB1 A: a+b two layersX: Dodecin subunit-likeH: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology)T: Amyloid beta a4 protein copper binding domain (domain 2)F: APP_Cu_bdECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.1490.140 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)
B3.30.1490.140 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF12924Copper-binding of amyloid precursor, CuBD (APP_Cu_bd)Copper-binding of amyloid precursor, CuBDThis short domain, part of the extra-cellular N-terminus of the amyloid precursor protein, APP, can bind both copper and zinc, CuBD. The structure of Cu2+-bound CuBD reveals that the metal ligands are His147, His151, Tyr168 and two water molecules, ...This short domain, part of the extra-cellular N-terminus of the amyloid precursor protein, APP, can bind both copper and zinc, CuBD. The structure of Cu2+-bound CuBD reveals that the metal ligands are His147, His151, Tyr168 and two water molecules, which are arranged in a square pyramidal geometry. The structure of Cu+-bound CuBD is almost identical to the Cu2+-bound structure except for the loss of one of the water ligands. The geometry of the site is unfavourable for Cu+, thus providing a mechanism by which CuBD could readily transfer Cu ions to other proteins.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Amyloid beta A4 protein precursor

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosP05067