2F8L
Crystal structure of a putative class i s-adenosylmethionine-dependent methyltransferase (lmo1582) from listeria monocytogenes at 2.20 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2f8la1 | Alpha and beta proteins (a/b) | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | N-6 DNA Methylase-like | Hypothetical protein Lmo1582 | (Listeria monocytogenes ) [TaxId: 1639 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YtxK_like | e2f8lA2 | A: alpha arrays | X: N-terminal helical domain in restriction-modification system methylation subunit-like | H: N-terminal helical domain in restriction-modification system methylation subunit (From Topology) | T: N-terminal helical domain in restriction-modification system methylation subunit | F: YtxK_like | ECOD (1.6) |
A | N6_Mtase | e2f8lA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: N6_Mtase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.470 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02384 | N-6 DNA Methylase (N6_Mtase) | N-6 DNA Methylase | - | Family | |
PF21106 | YtxK N-terminal helical domain (YtxK_like) | YtxK N-terminal helical domain | This entry represents the N-terminal helical domain found in the B. subtilis YtxK protein (Swiss:P37876), which is a restriction-modification system methylation subunit. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003356 | DNA methylase, adenine-specific | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR048375 | YtxK-like, N-terminal helical domain | Domain | |
IPR051537 | DNA Adenine N(4)/N(6)-Methyltransferase | Family | |
IPR016843 | S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted | Family |