2F4M
The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2f4ma1 | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Transglutaminase core | Peptide:N-glycanase 1, PNG1 | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d2f4ma2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d2f4mb2 | All alpha proteins | XPC-binding domain-like | XPC-binding domain | XPC-binding domain | automated matches | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d2f4mb3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Transglutaminase core | 8020479 | 4000877 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cysteine proteinases | 8032859 | 3001808 | SCOP2 (2022-06-29) |
B | SCOP2 Family | XPC-binding domain | 8028192 | 4000673 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | XPC-binding domain | 8040571 | 3000974 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Transglut_core | e2f4mA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Transglut_core | ECOD (1.6) |
B | XPC-binding | e2f4mB1 | A: alpha arrays | X: HTH | H: XPC-binding domain (From Topology) | T: XPC-binding domain | F: XPC-binding | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.620.30 | Alpha Beta | Roll | C8orf32 fold | CATH (4.3.0) | |
A | 2.20.25.10 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
B | 1.10.10.540 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | XPC-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01841 | Transglutaminase-like superfamily (Transglut_core) | Transglutaminase-like superfamily | - | Family | |
PF09280 | XPC-binding domain (XPC-binding) | XPC-binding domain | Members of this family adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036339 | PUB-like domain superfamily | Homologous Superfamily | |
IPR018997 | PUB domain | Domain | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR050883 | Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase | Family | |
IPR038680 | PAW domain superfamily | Homologous Superfamily | |
IPR002931 | Transglutaminase-like | Domain | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR006588 | Peptide N glycanase, PAW domain | Domain | |
IPR004806 | UV excision repair protein Rad23 | Family | |
IPR036353 | XPC-binding domain superfamily | Homologous Superfamily | |
IPR015360 | XPC-binding domain | Domain | |
IPR015940 | Ubiquitin-associated domain | Domain | |
IPR041811 | RAD23A/RAD23B, UBA1 domain | Domain | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR009060 | UBA-like superfamily | Homologous Superfamily | |
IPR006636 | Heat shock chaperonin-binding | Domain |