Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-1 crystal)
External Resource: Annotation
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
A | d2cwxa1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | RuBisCo, C-terminal domain | RuBisCo, large subunit, C-terminal domain | Ribulose 1,5-bisphosphate carboxylase-oxygenase | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
A | d2cwxa2 | Alpha and beta proteins (a+b) | Ferredoxin-like | RuBisCO, large subunit, small (N-terminal) domain | Ribulose 1,5-bisphosphate carboxylase-oxygenase | Ribulose 1,5-bisphosphate carboxylase-oxygenase | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
B [auth E] | d2cwxe1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | RuBisCo, C-terminal domain | RuBisCo, large subunit, C-terminal domain | Ribulose 1,5-bisphosphate carboxylase-oxygenase | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
B [auth E] | d2cwxe2 | Alpha and beta proteins (a+b) | Ferredoxin-like | RuBisCO, large subunit, small (N-terminal) domain | Ribulose 1,5-bisphosphate carboxylase-oxygenase | Ribulose 1,5-bisphosphate carboxylase-oxygenase | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8039597 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8039595 | 3000552 | SCOP2B (2022-06-29) |
B [auth E] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8039595 | 3000552 | SCOP2B (2022-06-29) |
B [auth E] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8039597 | 3001258 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | RuBisCO_large_N | e2cwxA1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
A | RuBisCO_large | e2cwxA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
B [auth E] | RuBisCO_large_N | e2cwxE1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
B [auth E] | RuBisCO_large | e2cwxE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
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A, B [auth E] | Ribulose bisphosphate carboxylase | | | - |
Chains | Accession | Name | Type |
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A, B [auth E] | IPR036376 | Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily | Homologous Superfamily |
A, B [auth E] | IPR000685 | Ribulose bisphosphate carboxylase, large subunit, C-terminal | Domain |
A, B [auth E] | IPR033966 | RuBisCO | Family |
A, B [auth E] | IPR036422 | RuBisCO large subunit, N-terminal domain superfamily | Homologous Superfamily |
A, B [auth E] | IPR017712 | Ribulose bisphosphate carboxylase, type III | Family |
A, B [auth E] | IPR017443 | Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal | Domain |