1L1O
Structure of the human Replication Protein A (RPA) trimerization core
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035991 | 3000135 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035991 | 3000135 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035663 | 3000135 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035663 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | tRNA_anti-codon_2 | e1l1oB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_anti-codon_2 | ECOD (1.6) |
E | tRNA_anti-codon_2 | e1l1oE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_anti-codon_2 | ECOD (1.6) |
C | Rep_fac-A_C_C | e1l1oC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Rep_fac-A_C_C | ECOD (1.6) |
C | Rep_fac-A_C_N | e1l1oC2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Rep_fac-A_C_N | ECOD (1.6) |
F | Rep_fac-A_C_C | e1l1oF1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Rep_fac-A_C_C | ECOD (1.6) |
F | Rep_fac-A_C_N | e1l1oF2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Rep_fac-A_C_N | ECOD (1.6) |
A | Rep_fac-A_3 | e1l1oA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Rep_fac-A_3 | ECOD (1.6) |
D | Rep_fac-A_3 | e1l1oD1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Rep_fac-A_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
E | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
C | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
C | 2.20.25.10 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
F | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
F | 2.20.25.10 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
D | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08784 | Replication protein A C terminal (RPA_C) | Replication protein A C terminal | This domain corresponds to the C terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoi ... | Domain | |
PF08646 | Replication factor-A C terminal domain (Rep_fac-A_C) | Replication factor-A C terminal domain | - | Family | |
PF08661 | Replication factor A protein 3 (Rep_fac-A_3) | Replication factor A protein 3 | Replication factor A is involved in eukaryotic DNA replication, recombination and repair. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014892 | Replication protein A, C-terminal | Domain | |
IPR040260 | Replication factor A protein-like | Family | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR014646 | Replication factor A protein 2 | Family | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR007199 | Replication factor-A protein 1, N-terminal | Domain | |
IPR047192 | Replication factor A, C-terminal, eukaryotes | Domain | |
IPR013955 | Replication factor A, C-terminal | Domain | |
IPR031657 | Replication protein A, OB domain | Domain | |
IPR004365 | OB-fold nucleic acid binding domain, AA-tRNA synthetase-type | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR004591 | Replication factor A protein 1 | Family | |
IPR013970 | Replication factor A protein 3 | Family | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |