Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth 3]SCOP2 FamilyPicornaviridae-like VP (VP1, VP2, VP3 and VP4) 8024174 4003466 SCOP2 (2022-06-29)
C [auth 3]SCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8036553 3000918 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]Rhv_5e1hxs11 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
B [auth 2]Rhv_1e1hxs21 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
C [auth 3]Rhv_3e1hxs31 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)
D [auth 4]Pico_P1A_Ne1hxs41 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Pico_P1A_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth 1]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B [auth 2]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C [auth 3]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D [auth 4]4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
B [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth 3]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
D [auth 4]PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]GENOME POLYPROTEIN, COAT PROTEIN VP1
B [auth 2]GENOME POLYPROTEIN, COAT PROTEIN VP2
C [auth 3]GENOME POLYPROTEIN, COAT PROTEIN VP3
D [auth 4]GENOME POLYPROTEIN, COAT PROTEIN VP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth 1]IPR002527Picornavirus 2B proteinDomain
A [auth 1]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth 1]IPR003138Picornavirus coat protein VP4Family
A [auth 1]IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth 1]IPR001676Picornavirus capsidDomain
A [auth 1]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth 1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 1]IPR000081Peptidase C3, picornavirus core protein 2ADomain
A [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth 1]IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth 1]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth 1]IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth 1]IPR014838Poliovirus 3A protein-likeDomain
A [auth 1]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
A [auth 1]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A [auth 1]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth 1]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth 2]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 2]IPR002527Picornavirus 2B proteinDomain
B [auth 2]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 2]IPR003138Picornavirus coat protein VP4Family
B [auth 2]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 2]IPR001676Picornavirus capsidDomain
B [auth 2]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 2]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 2]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 2]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 2]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 2]IPR014838Poliovirus 3A protein-likeDomain
B [auth 2]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth 2]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth 2]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 2]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth 3]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 3]IPR002527Picornavirus 2B proteinDomain
C [auth 3]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 3]IPR003138Picornavirus coat protein VP4Family
C [auth 3]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 3]IPR001676Picornavirus capsidDomain
C [auth 3]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 3]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 3]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 3]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 3]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 3]IPR014838Poliovirus 3A protein-likeDomain
C [auth 3]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth 3]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth 3]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 3]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth 4]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth 4]IPR002527Picornavirus 2B proteinDomain
D [auth 4]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth 4]IPR003138Picornavirus coat protein VP4Family
D [auth 4]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth 4]IPR001676Picornavirus capsidDomain
D [auth 4]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 4]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth 4]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 4]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth 4]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth 4]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth 4]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 4]IPR014838Poliovirus 3A protein-likeDomain
D [auth 4]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth 4]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth 4]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth 4]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain