1XOV
The crystal structure of the listeria monocytogenes bacteriophage PSA endolysin PlyPSA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1xova1 | All beta proteins | SH3-like barrel | Prokaryotic SH3-related domain | Ply C-terminal domain-like | Endolysin Ply, C-terminal domain | (Listeria phage PSA ) [TaxId: 171618 ], | SCOPe (2.08) |
A | d1xova2 | Alpha and beta proteins (a/b) | Phosphorylase/hydrolase-like | Zn-dependent exopeptidases | N-acetylmuramoyl-L-alanine amidase-like | Endolysin Ply, catalytic domain | (Listeria phage PSA ) [TaxId: 171618 ], | SCOPe (2.08) |
A | d1xova3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Listeria phage PSA ) [TaxId: 171618 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ply C-terminal domain-like | 8021467 | 4001718 | SCOP2 (2022-06-29) |
A | SCOP2 Family | N-acetylmuramoyl-L-alanine amidase-like | 8021470 | 4001130 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Prokaryotic SH3-related domain | 8033847 | 3001455 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Zn-dependent exopeptidases | 8033850 | 3000662 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CwlA_1st | e1xovA4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: CwlA_1st | ECOD (1.6) |
A | CwlA_2nd | e1xovA3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: CwlA_2nd | ECOD (1.6) |
A | Amidase_3 | e1xovA2 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Amidase_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.630.40 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Zn-dependent exopeptidases | CATH (4.3.0) |
A | 2.30.30.40 | Mainly Beta | Roll | SH3 type barrels. | SH3 Domains | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18341 | PSA endolysin C-terminal cell wall binding domain (PSA_CBD) | PSA endolysin C-terminal cell wall binding domain | This is the C-terminal domain of bacteriophage PSA endolysin. The C-terminal domain is the cell wall-binding domain (CBD) which is composed of two structurally homologous subdomains. CBD comprises two copies of a beta-barrel-like folds, which are hel ... | Domain | |
PF01520 | N-acetylmuramoyl-L-alanine amidase (Amidase_3) | N-acetylmuramoyl-L-alanine amidase | This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050695 | N-acetylmuramoyl-L-alanine amidase 3 | Family | |
IPR041341 | PSA endolysin, cell wall binding domain | Domain | |
IPR002508 | N-acetylmuramoyl-L-alanine amidase, catalytic domain | Domain |