1UPG
Crystal structure of the quorum-sensing protein TraM from Agrobacterium tumefaciens
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1upga_ | All alpha proteins | Long alpha-hairpin | Transcriptional repressor TraM | Transcriptional repressor TraM | Transcriptional repressor TraM | (Agrobacterium tumefaciens ) [TaxId: 358 ], | SCOPe (2.08) |
B | d1upgb_ | All alpha proteins | Long alpha-hairpin | Transcriptional repressor TraM | Transcriptional repressor TraM | Transcriptional repressor TraM | (Agrobacterium tumefaciens ) [TaxId: 358 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Prok-TraM | e1upgA1 | A: alpha bundles | X: Long alpha-hairpin | H: Transcriptional repressor TraM (From Topology) | T: Transcriptional repressor TraM | F: Prok-TraM | ECOD (1.6) |
B | Prok-TraM | e1upgB1 | A: alpha bundles | X: Long alpha-hairpin | H: Transcriptional repressor TraM (From Topology) | T: Transcriptional repressor TraM | F: Prok-TraM | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.287.160 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | HR1 repeat | CATH (4.3.0) |
B | 1.10.287.160 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | HR1 repeat | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09228 | Prokaryotic Transcriptional repressor TraM (Prok-TraM) | Prokaryotic Transcriptional repressor TraM | Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices. These proteins can be divided into two parts, a 'globular head' and an 'elongated tail', and they negatively regu ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036336 | Transcriptional repressor TraM superfamily | Homologous Superfamily | |
IPR015309 | Transcriptional repressor TraM | Family |