1UBD
CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d1ubdc1 | Small proteins | beta-beta-alpha zinc fingers | beta-beta-alpha zinc fingers | Classic zinc finger, C2H2 | Ying-yang 1 (yy1, zinc finger domain) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2 Family | Classic zinc finger C2H2 | 8026593 | 4003583 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Classic zinc finger C2H2 | 8026596 | 4003583 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Classic zinc finger C2H2 | 8026599 | 4003583 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Classic zinc finger C2H2 | 8026602 | 4003583 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8038972 | 3001077 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8038975 | 3001077 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8038978 | 3001077 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8038981 | 3001077 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | F_UNCLASSIFIED | e1ubdC3 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00096 | e1ubdC4 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF00096 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00096 | Zinc finger, C2H2 type (zf-C2H2) | Zinc finger, C2H2 type | The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013087 | Zinc finger C2H2-type | Domain | |
IPR017114 | C2H2-type Zinc finger protein, YY1-like | Family | |
IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily |