1U04
Crystal structure of full length Argonaute from Pyrococcus furiosus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1u04a1 | All beta proteins | SH3-like barrel | PAZ domain | PAZ domain | Argonaute homologue PF0537 | (Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ], | SCOPe (2.08) |
A | d1u04a3 | Alpha and beta proteins (a/b) | Phosphotyrosine protein phosphatases I-like | PIWI domain N-terminal-like | PIWI domain N-terminal | Argonaute homologue PF0537 | (Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ], | SCOPe (2.08) |
A | d1u04a4 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | PIWI domain C-terminal | Argonaute homologue PF0537 | (Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ], | SCOPe (2.08) |
A | d1u04a5 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | PAZ domain | 8028228 | 4000853 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PIWI domain | 8028229 | 4002242 | SCOP2 (2022-06-29) |
A | SCOP2 Family | N-terminal domain of argonaute | 8091461 | 4004602 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Mid domain of argonaute | 8091462 | 4004605 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PAZ domain | 8040607 | 3001750 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8040608 | 3000143 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain, RBD | 8091463 | 3000110 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Mid domain of argonaute | 8091464 | 3002210 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PAZ_siRNAbind | e1u04A1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PAZ_siRNAbind | ECOD (1.6) |
A | EUF08366 | e1u04A2 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08366 | ECOD (1.6) |
A | EUF08367 | e1u04A3 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08367 | ECOD (1.6) |
A | COG1431_4th | e1u04A4 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: COG1431_4th | ECOD (1.6) |
A | Piwi_C_1 | e1u04A5 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.70.180 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
A | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22476 | Argonaute, N-terminal domain (Ago_N_3) | Argonaute, N-terminal domain | This domain is found at the N-terminal end of Protein argonaute from Pyrococcus furiosus (Ago), a component of the RNAi effector complex (RISC). Ago is organised into four domains: N (this entry), PAZ (Pfam:PF12212), middle and PIWI (Pfam:PF02171). T ... | Domain | |
PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family | |
PF12212 | PAZ domain (PAZ_2) | PAZ domain | This entry corresponds to the PAZ domain found in some archaeal argonaute proteins [1]. It is an siRNA binding domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR021103 | Argonaute PAZ domain, archaea | Domain | |
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR036085 | PAZ domain superfamily | Homologous Superfamily | |
IPR003165 | Piwi domain | Domain | |
IPR003100 | PAZ domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |