1TZL

Crystal Structure of Pyranose 2-Oxidase from the White-Rot Fungus Peniophora sp.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1tzla1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
A	d1tzla2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
B	d1tzlb1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
B	d1tzlb2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
C	d1tzlc1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
C	d1tzlc2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
D	d1tzld1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
D	d1tzld2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
E	d1tzle1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
E	d1tzle2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
F	d1tzlf1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
F	d1tzlf2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
G	d1tzlg1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
G	d1tzlg2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
H	d1tzlh1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)
H	d1tzlh2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Peniophora sp. SG ) [TaxId: 204723 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Flavoreductase-like	8058148	3000055	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	pyranose_ox	e1tzlA1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
A	GMC_oxred_N	e1tzlA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
B	pyranose_ox	e1tzlB1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
B	GMC_oxred_N	e1tzlB2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
C	pyranose_ox	e1tzlC1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
C	GMC_oxred_N	e1tzlC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
D	pyranose_ox	e1tzlD1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
D	GMC_oxred_N	e1tzlD2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
E	pyranose_ox	e1tzlE1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
E	GMC_oxred_N	e1tzlE2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
F	pyranose_ox	e1tzlF1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
F	GMC_oxred_N	e1tzlF2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
G	pyranose_ox	e1tzlG1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
G	GMC_oxred_N	e1tzlG2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
H	pyranose_ox	e1tzlH1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
H	GMC_oxred_N	e1tzlH2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
B	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
C	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
D	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
E	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
F	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
G	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
H	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF05199	GMC oxidoreductase (GMC_oxred_C)	GMC oxidoreductase	This domain found associated with Pfam:PF00732.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	pyranose oxidase	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors pyranose oxidase activity catalytic activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	periplasmic space cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012814	Pyranose 2-oxidase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007867	Glucose-methanol-choline oxidoreductase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR051473	Glucose-Methanol-Choline (GMC) Oxidoreductase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.