1T4O
Crystal structure of rnt1p dsRBD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1t4oa_ | Alpha and beta proteins (a+b) | dsRBD-like | dsRNA-binding domain-like | Double-stranded RNA-binding domain (dsRBD) | RNase III, C-terminal domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
B | d1t4ob_ | Alpha and beta proteins (a+b) | dsRBD-like | dsRNA-binding domain-like | Double-stranded RNA-binding domain (dsRBD) | RNase III, C-terminal domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Double-stranded RNA-binding domain (dsRBD) | 8027592 | 4001172 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | dsRNA-binding domain-like | 8039971 | 3000985 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | dsRNA-binding domain-like | 8039971 | 3000985 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | dsrm | e1t4oA1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: dsrm | ECOD (1.6) |
B | dsrm | e1t4oB1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: dsrm | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
B | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00035 | Double-stranded RNA binding motif (dsrm) | Double-stranded RNA binding motif | Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five d ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR044449 | Rnt1/Pac1, double-stranded RNA binding domain, fungi | Domain | |
IPR036389 | Ribonuclease III, endonuclease domain superfamily | Homologous Superfamily | |
IPR000999 | Ribonuclease III domain | Domain | |
IPR014720 | Double-stranded RNA-binding domain | Domain | |
IPR040540 | Ribonuclease III, N-terminal domain | Domain |