1RIF
Crystal structure of the UvsW helicase from Bacteriophage T4
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1rifa_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | DNA helicase UvsW | DNA helicase UvsW | (Tequatrovirus T4 ) [TaxId: 10665 ], | SCOPe (2.08) |
B | d1rifb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | DNA helicase UvsW | DNA helicase UvsW | (Tequatrovirus T4 ) [TaxId: 10665 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | DNA helicase UvsW | 8028287 | 4001073 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RecA-like P-loop NTPases | 8040666 | 3002019 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040666 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | uvsW | e1rifA2 | A: a+b two layers | X: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | H: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | T: DNA helicase UvsW N-terminal a+b domain-related | F: uvsW | ECOD (1.6) |
A | DEAD_3 | e1rifA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_3 | ECOD (1.6) |
B | uvsW | e1rifB2 | A: a+b two layers | X: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | H: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | T: DNA helicase UvsW N-terminal a+b domain-related | F: uvsW | ECOD (1.6) |
B | DEAD_3 | e1rifB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.780.20 | Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor Eif1 | CATH (4.3.0) | |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 3.30.780.20 | Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor Eif1 | CATH (4.3.0) | |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21241 | DNA helicase UvsW, N-terminal (UvsW_N) | DNA helicase UvsW, N-terminal | This is the small N-terminal alpha+beta domain of the DNA helicase UvsW from bacteriophage T4 [1,2], which consists of five beta-strands and two alpha-helices. This domain is structurally homologous to the DNA-binding domain of the T4 transcription f ... | Domain | |
PF04851 | Type III restriction enzyme, res subunit (ResIII) | Type III restriction enzyme, res subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038341 | DNA helicase UvsW superfamily | Homologous Superfamily | |
IPR050742 | Helicase and Restriction-Modification Enzyme | Family | |
IPR006935 | Helicase/UvrB, N-terminal | Domain | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR049409 | ATP-dependent DNA helicase uvsW, N-terminal | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR020975 | UvsW.1 domain | Domain | |
IPR049430 | ATP-dependent DNA helicase uvsW, N-terminal domain superfamily | Homologous Superfamily | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |