Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth L]d1rcol1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
A [auth L]d1rcol2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
C [auth B]d1rcob1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
C [auth B]d1rcob2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
Ed1rcoe1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
Ed1rcoe2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
G [auth H]d1rcoh1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
G [auth H]d1rcoh2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
I [auth K]d1rcok1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
I [auth K]d1rcok2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
M [auth R]d1rcor1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
M [auth R]d1rcor2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
O [auth V]d1rcov1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
O [auth V]d1rcov2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
K [auth O]d1rcoo1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
K [auth O]d1rcoo2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
B [auth S]d1rcos_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
D [auth C]d1rcoc_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
Fd1rcof_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
H [auth I]d1rcoi_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
J [auth M]d1rcom_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
L [auth P]d1rcop_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
N [auth T]d1rcot_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)
P [auth W]d1rcow_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Spinacia oleracea ) [TaxId: 3562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth L]SCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
A [auth L]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
M [auth R]SCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
M [auth R]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyRuBisCo C-terminal domain8043674 3000552 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035405 3001258 SCOP2B (2022-06-29)
B [auth S]SCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)
J [auth M]SCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)
P [auth W]SCOP2B SuperfamilyRuBisCO small subunit8035809 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]PF02788e1rcoL1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
A [auth L]PF00016e1rcoL2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
C [auth B]PF02788e1rcoB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
C [auth B]PF00016e1rcoB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
EPF02788e1rcoE1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
EPF00016e1rcoE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
G [auth H]PF02788e1rcoH1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
G [auth H]PF00016e1rcoH2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
I [auth K]PF02788e1rcoK1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
I [auth K]PF00016e1rcoK2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
M [auth R]PF02788e1rcoR1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
M [auth R]PF00016e1rcoR2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
O [auth V]PF02788e1rcoV1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
O [auth V]PF00016e1rcoV2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
K [auth O]PF02788e1rcoO1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
K [auth O]PF00016e1rcoO2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
B [auth S]PF00101e1rcoS1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
D [auth C]PF00101e1rcoC1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
FPF00101e1rcoF1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
H [auth I]PF00101e1rcoI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
J [auth M]PF00101e1rcoM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
L [auth P]PF00101e1rcoP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
N [auth T]PF00101e1rcoT1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
P [auth W]PF00101e1rcoW1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth L]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A [auth L]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C [auth B]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C [auth B]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G [auth H]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G [auth H]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
I [auth K]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
I [auth K]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
M [auth R]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
M [auth R]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
O [auth V]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
O [auth V]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
K [auth O]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
K [auth O]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
B [auth S]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
D [auth C]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
F3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
H [auth I]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
J [auth M]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L [auth P]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N [auth T]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P [auth W]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain