1R11
Structure Determination of the Dimeric Endonuclease in a Pseudo-face-centerd P21 space group
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040168 | 3000437 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040170 | 3000437 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | tRNA-intron endonuclease N-terminal domain-like | 8040172 | 3001683 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040168 | 3000437 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | tRNA-intron endonuclease N-terminal domain-like | 8040172 | 3001683 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | tRNA-intron endonuclease catalytic domain-like | 8040170 | 3000437 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | tRNA_int_endo_N_1 | e1r11A1 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: tRNA_int_endo_N_1 | ECOD (1.6) |
A | tRNA_int_endo | e1r11A4 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: tRNA_int_endo | ECOD (1.6) |
A | tRNA_int_endo_1 | e1r11A3 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: tRNA_int_endo_1 | ECOD (1.6) |
B | tRNA_int_endo_N_1 | e1r11B1 | A: a+b two layers | X: Homing endonucleases-like | H: tRNA-intron endonuclease N-terminal domain-like (From Topology) | T: tRNA-intron endonuclease N-terminal domain-like | F: tRNA_int_endo_N_1 | ECOD (1.6) |
B | tRNA_int_endo | e1r11B4 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: tRNA_int_endo | ECOD (1.6) |
B | tRNA_int_endo_1 | e1r11B3 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: tRNA-intron endonuclease catalytic domain-like (From Topology) | T: tRNA-intron endonuclease catalytic domain-like | F: tRNA_int_endo_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1350.150 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
A | 3.40.1170.20 | Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | tRNA intron endonuclease, N-terminal domain | CATH (4.3.0) |
A | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
B | 3.40.1350.150 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
B | 3.40.1170.20 | Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | tRNA intron endonuclease, N-terminal domain | CATH (4.3.0) |
B | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02778 | tRNA intron endonuclease, N-terminal domain (tRNA_int_endo_N) | tRNA intron endonuclease, N-terminal domain | Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. | Domain | |
PF01974 | tRNA intron endonuclease, catalytic C-terminal domain (tRNA_int_endo) | tRNA intron endonuclease, catalytic C-terminal domain | Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006677 | tRNA intron endonuclease, catalytic domain-like | Domain | |
IPR036740 | tRNA intron endonuclease, N-terminal domain superfamily | Homologous Superfamily | |
IPR023516 | tRNA-splicing endonuclease, archaeal long subfamily | Family | |
IPR011856 | tRNA endonuclease-like domain superfamily | Homologous Superfamily | |
IPR036167 | tRNA intron endonuclease, catalytic domain-like superfamily | Homologous Superfamily | |
IPR006678 | tRNA intron endonuclease, N-terminal | Domain | |
IPR006676 | tRNA-splicing endonuclease | Family |