1QJZ
Three Dimensional Structure of Physalis Mottle Virus : Implications for the Viral Assembly
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1qjza_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | Tymovirus coat protein | (Physalis mottle virus ) [TaxId: 72539 ], | SCOPe (2.08) |
B | d1qjzb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | Tymovirus coat protein | (Physalis mottle virus ) [TaxId: 72539 ], | SCOPe (2.08) |
C | d1qjzc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | Tymovirus coat protein | (Physalis mottle virus ) [TaxId: 72539 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8032574 | 3000918 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8032574 | 3000918 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8032574 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Tymo_coat | e1qjzA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
B | Tymo_coat | e1qjzB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
C | Tymo_coat | e1qjzC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00983 | Tymovirus coat protein (Tymo_coat) | Tymovirus coat protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
COAT PROTEIN | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000574 | Tymovirus coat protein | Domain | |
IPR029053 | Viral coat protein subunit | Homologous Superfamily |