Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1p84a1 Alpha and beta proteins (a+b) LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase MPP-like Cytochrome bc1 core subunit 1 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Jd1p84j_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Kd1p84k_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd1p84b1 Alpha and beta proteins (a+b) LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase MPP-like Cytochrome bc1 core subunit 2 (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Cd1p84c2 Membrane and cell surface proteins and peptides Heme-binding four-helical bundle Transmembrane di-heme cytochromes Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Mitochondrial cytochrome b subunit, N-terminal domain (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Cd1p84c1 Membrane and cell surface proteins and peptides a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Mitochondrial cytochrome b subunit, C-terminal domain (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Dd1p84d1 All alpha proteins Cytochrome c Cytochrome c Cytochrome bc1 domain Cytochrome bc1 domain (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Dd1p84d2 Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Ed1p84e1 All beta proteins ISP domain ISP domain Rieske iron-sulfur protein (ISP) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Ed1p84e2 Membrane and cell surface proteins and peptides Single transmembrane helix ISP transmembrane anchor ISP transmembrane anchor Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Fd1p84f_ Membrane and cell surface proteins and peptides Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Gd1p84g_ Membrane and cell surface proteins and peptides 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Hd1p84h_ Membrane and cell surface proteins and peptides Single transmembrane helix Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Id1p84i_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040292 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040294 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040297 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040300 3001831 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransmembrane di-heme cytochromes8040302 3000517 SCOP2B (2022-06-29)
CSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040299 3000966 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c8040304 3000815 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) transmembrane anchor8040305 3000762 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP transmembrane anchor8040308 3000753 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP domain8040307 3000233 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040312 3000806 SCOP2B (2022-06-29)
GSCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040315 3000797 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040318 3000770 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040319 3000779 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APeptidase_M16_Ce1p84A2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16_CECOD (1.6)
APeptidase_M16e1p84A1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16ECOD (1.6)
JV-set_8e1p84J1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
KV-sete1p84K1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
BPeptidase_M16e1p84B1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16ECOD (1.6)
BUNK_F_TYPEe1p84B2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: UNK_F_TYPEECOD (1.6)
CCytochrom_B_Ce1p84C1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: Cytochrom_B_CECOD (1.6)
CCytochrome_Be1p84C2 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: Cytochrome_BECOD (1.6)
DCytochrom_C1_Ne1p84D1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C1_NECOD (1.6)
DCytochrom_C1_Ce1p84D2 A: extended segmentsX: cytochrome c1 transmembrane anchor (From Topology)H: cytochrome c1 transmembrane anchor (From Topology)T: cytochrome c1 transmembrane anchorF: Cytochrom_C1_CECOD (1.6)
ERieske_cytochrome_bc1e1p84E1 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: Rieske_cytochrome_bc1ECOD (1.6)
ERieske_6e1p84E3 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: Rieske_6ECOD (1.6)
EUCR_TMe1p84E2 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: UCR_TMECOD (1.6)
FUCR_hingee1p84F1 A: alpha bundlesX: cytochrome bc1 complex 11 kDa protein-likeH: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_hingeECOD (1.6)
GUCR_14kDe1p84G1 A: alpha arraysX: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_14kDECOD (1.6)
HUcrQe1p84H1 A: extended segmentsX: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UcrQECOD (1.6)
IUCR_UQCRX_QCR9e1p84I1 A: extended segmentsX: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_UQCRX_QCR9ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
J2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
K2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
C1.20.810.10 Mainly Alpha Up-down Bundle Cytochrome Bc1 Complex Chain CCATH (4.3.0)
D1.20.5.100 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome c1, transmembrane anchor, C-terminalCATH (4.3.0)
D1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
E1.20.5.270 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Ubiquinol cytochrome reductase, transmembrane domainCATH (4.3.0)
E2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
F1.10.287.20 Mainly Alpha Orthogonal Bundle Helix Hairpins Ubiquinol-cytochrome C reductase hinge domainCATH (4.3.0)
G1.10.1090.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain FCATH (4.3.0)
H1.20.5.210 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 8CATH (4.3.0)
I1.20.5.260 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 9CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
Fv-1 VH Mus musculus (house mouse) IGHV3-6*02, IGHV3-6*01, IGHJ4*01 V-DOMAIN VH IG FV-HEAVY_KAPPA IMGT (202415-0)
Fv-1 V-KAPPA Mus musculus (house mouse) IGKV10-94*03, IGKV10-96*03, IGKV10-94*04, IGKV10-94*06, IGKV10-96*04, IGKV10-94*05, IGKV10-94*08, IGKJ1*01 V-DOMAIN V-KAPPA IG FV-HEAVY_KAPPA IMGT (202415-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Heavy ChainIGHV3 -ubiquinol-cytochrome c reductase iron-sulfursubunit SAbDab (2024-04-19)
Light ChainIGKV10 Kappaubiquinol-cytochrome c reductase iron-sulfursubunit SAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1].Domain
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petD- Domain
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petB- Domain
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge protein- Family
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
PF02939UcrQ family (UcrQ)UcrQ family- Family
PF05365Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like (UCR_UQCRX_QCR9)Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ubiquinol-cytochrome C reductase complex core protein I
Heavy Chain (Vh) Of Fv-Fragment---
Light Chain (Vl) Of Fv-Fragment---
Ubiquinol-cytochrome C reductase complex core protein 2
cytochrome b
Cytochrome c1, heme protein
Ubiquinol-cytochrome C reductase iron-sulfur subunit
Ubiquinol-cytochrome C reductase complex 17 kDa protein-
Ubiquinol-cytochrome C reductase complex 14 kDa protein-
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C-
Ubiquinol-cytochrome C reductase complex 7.3 kDa protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR007863Peptidase M16, C-terminalDomain
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
IPR011765Peptidase M16, N-terminalDomain
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
IPR011765Peptidase M16, N-terminalDomain
IPR001431Peptidase M16, zinc-binding siteBinding Site
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
IPR005798Cytochrome b/b6, C-terminalDomain
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
IPR030689Cytochrome bFamily
IPR005797Cytochrome b/b6, N-terminal domainDomain
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
IPR002326Cytochrome c1Family
IPR009056Cytochrome c-like domainDomain
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
IPR014349Rieske iron-sulphur proteinFamily
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
IPR005805Rieske iron-sulphur protein, C-terminalDomain
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
IPR003197Cytochrome b-c1 complex subunit 7Family
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
IPR004205Cytochrome b-c1 complex subunit 8Family
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
IPR008027Cytochrome b-c1 complex subunit 9Family
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD