1O54
Crystal structure of SAM-dependent O-methyltransferase (TM0748) from Thermotoga maritima at 1.65 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1o54a1 | Alpha and beta proteins (a/b) | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | tRNA(1-methyladenosine) methyltransferase-like | Hypothetical protein TM0748 | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
A | d1o54a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Thermotoga maritima ) [TaxId: 2336 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | tRNA(1-methyladenosine) methyltransferase, catalytic subunit-like | 8024833 | 4003408 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8037212 | 3000118 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Transcription elongation factor, GreA/GreB-like | 8090658 | 3002449 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GCD14_N_1 | e1o54A2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: GCD14_N_1 | ECOD (1.6) |
A | Methyltransf_11_4 | e1o54A3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.330.20 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08704 | tRNA methyltransferase complex GCD14 subunit (GCD14) | tRNA methyltransferase complex GCD14 subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014816 | tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR049470 | tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61, C-terminal | Domain |