1K1Y

Crystal structure of thermococcus litoralis 4-alpha-glucanotransferase complexed with acarbose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1k1ya1	All alpha proteins	immunoglobulin/albumin-binding domain-like	Families 57/38 glycoside transferase middle domain	4-alpha-glucanotransferase, domain 2	4-alpha-glucanotransferase, domain 2	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)
A	d1k1ya2	All beta proteins	Supersandwich	Galactose mutarotase-like	4-alpha-glucanotransferase, C-terminal domain	4-alpha-glucanotransferase, C-terminal domain	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)
A	d1k1ya3	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	Glycoside hydrolase/deacetylase	4-alpha-glucanotransferase, N-terminal domain	4-alpha-glucanotransferase, N-terminal domain	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)
B	d1k1yb1	All alpha proteins	immunoglobulin/albumin-binding domain-like	Families 57/38 glycoside transferase middle domain	4-alpha-glucanotransferase, domain 2	4-alpha-glucanotransferase, domain 2	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)
B	d1k1yb2	All beta proteins	Supersandwich	Galactose mutarotase-like	4-alpha-glucanotransferase, C-terminal domain	4-alpha-glucanotransferase, C-terminal domain	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)
B	d1k1yb3	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	Glycoside hydrolase/deacetylase	4-alpha-glucanotransferase, N-terminal domain	4-alpha-glucanotransferase, N-terminal domain	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Galactose mutarotase-like	8032320	3000035	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Glycoside hydrolase/deacetylase	8032321	3001025	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Families 57/38 glycoside transferase middle domain	8032319	3000997	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Families 57/38 glycoside transferase middle domain	8032319	3000997	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Galactose mutarotase-like	8032320	3000035	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Glycoside hydrolase/deacetylase	8032321	3001025	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1926	e1k1yA1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: DUF1926	ECOD (1.6)
A	DUF1925	e1k1yA2	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: Families 57/38 glycoside transferase middle domain (From Topology)	T: Families 57/38 glycoside transferase middle domain	F: DUF1925	ECOD (1.6)
A	Glyco_hydro_57_1st	e1k1yA3	A: a/b barrels	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase (From Topology)	T: Glycoside hydrolase/deacetylase	F: Glyco_hydro_57_1st	ECOD (1.6)
B	DUF1926	e1k1yB1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: DUF1926	ECOD (1.6)
B	DUF1925	e1k1yB2	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: Families 57/38 glycoside transferase middle domain (From Topology)	T: Families 57/38 glycoside transferase middle domain	F: DUF1925	ECOD (1.6)
B	Glyco_hydro_57_1st	e1k1yB3	A: a/b barrels	X: TIM beta/alpha-barrel	H: Glycoside hydrolase/deacetylase (From Topology)	T: Glycoside hydrolase/deacetylase	F: Glyco_hydro_57_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.110.20	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel		CATH (4.3.0)
A	2.70.98.10	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)
B	3.20.110.20	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel		CATH (4.3.0)
B	2.70.98.10	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03065	Glycosyl hydrolase family 57 (Glyco_hydro_57)	Glycosyl hydrolase family 57	This family includes alpha-amylase (EC:3.2.1.1), 4--glucanotransferase (EC:2.4.1.-) and amylopullulanase enzymes.	Domain
A, B	PF09094	Alpha-amylase/4-alpha-glucanotransferase, middle domain (AmyA-A_glucT_m)	Alpha-amylase/4-alpha-glucanotransferase, middle domain	This entry represents a domain found in prokaryotic alpha-amylase and 4-alpha-glucanotransferase. It is adjacent to the C-terminal domain (Pfam:PF09095). This domain adopts an immunoglobulin/ albumin-binding domain-like fold, with a bundle of three a ...	This entry represents a domain found in prokaryotic alpha-amylase and 4-alpha-glucanotransferase. It is adjacent to the C-terminal domain (Pfam:PF09095). This domain adopts an immunoglobulin/ albumin-binding domain-like fold, with a bundle of three alpha-helices. Their function is, as yet, unknown [1].	Domain
A, B	PF09095	Alpha-amylase/4-alpha-glucanotransferase, C-terminal (AmyA-gluTrfs_C)	Alpha-amylase/4-alpha-glucanotransferase, C-terminal	This entry represents a domain found in prokaryotic alpha-amylase and 4-alpha-glucanotransferase. It adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this f ...	This entry represents a domain found in prokaryotic alpha-amylase and 4-alpha-glucanotransferase. It adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this family is, as yet, unknown, however it has been proposed that they may play a role in transglycosylation reactions [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	4-ALPHA-GLUCANOTRANSFERASE	binding carbohydrate binding glycosyltransferase activity 4-alpha-glucanotransferase activity transferase activity hexosyltransferase activity catalytic activity beta-maltose 4-alpha-glucanotransferase activity	carbohydrate metabolic process organic substance metabolic process primary metabolic process metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Homologous Superfamily
A, B	IPR028995	Glycoside hydrolase families 57/38, central domain superfamily	Homologous Superfamily
A, B	IPR015178	Alpha-amylase/4-alpha-glucanotransferase, central domain	Domain
A, B	IPR004300	Glycoside hydrolase family 57, N-terminal domain	Domain
A, B	IPR015179	Alpha-amylase/4-alpha-glucanotransferase, C-terminal	Domain
A, B	IPR014718	Glycoside hydrolase-type carbohydrate-binding	Homologous Superfamily
A, B	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.