1IBL

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN


Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpecies
Ed1iblb_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Fd1iblc_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Gd1ibld_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Hd1ible_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Id1iblf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Jd1iblg_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Ld1ibli_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Md1iblj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Nd1iblk_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Od1ibll_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Pd1iblm_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Qd1ibln_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Rd1iblo_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Sd1iblp_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Td1iblq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Ud1iblr_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Vd1ibls_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Xd1iblv_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Kd1iblh_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
Wd1iblt_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
ChainDomainClassArchitectureTopologyHomology
E3.40.50.10490 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like protein
E3.40.50.10490 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like protein
E1.10.287.610 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
F3.30.300.20 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3
F3.30.1140.32 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3, C-terminal domain
G1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41 Chain A, domain 1
G1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41 Chain A, domain 1
G3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region Chain A
H3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
H3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2
I3.30.70.60 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribosomal protein S6/Translation elongation factor EF1B
J1.10.455.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal protein S7/S5
L3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2
M3.30.70.600 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribosomal protein S10
N3.30.420.80 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5
O2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
P1.10.8.50 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3
P4.10.910.10 Few Secondary Structures Irregular 30s ribosomal protein s13 domain 2
Q4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14 Chain N
R1.10.287.10 Mainly Alpha Orthogonal Bundle Helix Hairpins S15/NS1, RNA-binding
S3.30.1320.10 Alpha Beta 2-Layer Sandwich S16 Ribosomal Protein Chain: A
T2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
U4.10.640.10 Few Secondary Structures Irregular 30s Ribosomal Protein S18 Ribosomal protein S18
V3.30.860.10 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19 Chain A
K3.30.1370.30 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1
K3.30.1490.10 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1
W1.20.58.110 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
EPF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
FPF07650KH domain (KH_2)KH domain- Domain
FPF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
GPF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
GPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
HPF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
HPF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
IPF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
JPF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
LPF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
MPF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20e- Family
NPF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
OPF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PPF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
QPF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
RPF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
SPF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
TPF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
UPF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
VPF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
XPF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family
KPF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
WPF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A16S RIBOSOMAL RNAnone none none
XP-SITE MESSENGER RNA FRAGMENTnone none none
YANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNAnone none none
ZA-SITE MESSENGER RNA FRAGMENTnone none none
B30S RIBOSOMAL PROTEIN S2
C30S RIBOSOMAL PROTEIN S3
D30S RIBOSOMAL PROTEIN S4
E30S RIBOSOMAL PROTEIN S5
F30S RIBOSOMAL PROTEIN S6
G30S RIBOSOMAL PROTEIN S7
I30S RIBOSOMAL PROTEIN S9
J30S RIBOSOMAL PROTEIN S10
K30S RIBOSOMAL PROTEIN S11
L30S RIBOSOMAL PROTEIN S12
M30S RIBOSOMAL PROTEIN S13
N30S RIBOSOMAL PROTEIN S14
O30S RIBOSOMAL PROTEIN S15
P30S RIBOSOMAL PROTEIN S16
Q30S RIBOSOMAL PROTEIN S17
R30S RIBOSOMAL PROTEIN S18
S30S RIBOSOMAL PROTEIN S19
V30S RIBOSOMAL PROTEIN THX
H30S RIBOSOMAL PROTEIN S8
T30S RIBOSOMAL PROTEIN S20