1HY5
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF YOPE-YERSINIA PESTIS GAP EFFECTOR PROTEIN.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1hy5a_ | All alpha proteins | Four-helical up-and-down bundle | Bacterial GAP domain | Bacterial GAP domain | YopE | (Yersinia pestis ) [TaxId: 632 ], | SCOPe (2.08) |
B | d1hy5b1 | All alpha proteins | Four-helical up-and-down bundle | Bacterial GAP domain | Bacterial GAP domain | YopE | (Yersinia pestis ) [TaxId: 632 ], | SCOPe (2.08) |
B | d1hy5b2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Yersinia pestis ) [TaxId: 632 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Bacterial GAP domain | 8024176 | 4000836 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Bacterial GAP domain | 8036555 | 3001649 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Bacterial GAP domain | 8036555 | 3001649 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YopE | e1hy5A1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Bacterial GAP domain (From Topology) | T: Bacterial GAP domain | F: YopE | ECOD (1.6) |
B | YopE | e1hy5B1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Bacterial GAP domain (From Topology) | T: Bacterial GAP domain | F: YopE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.260 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Virulence factor YopE uncharacterised domain | CATH (4.3.0) |
B | 1.20.120.260 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Virulence factor YopE uncharacterised domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03545 | Yersinia virulence determinant (YopE) (YopE) | Yersinia virulence determinant (YopE) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014773 | Virulence factor YopE, GAP domain | Domain | |
IPR015110 | YopE, N-terminal domain | Domain | |
IPR003537 | Type III secretion system effector protein YopE-like | Family | |
IPR037168 | Virulence factor YopE, GAP domain superfamily | Homologous Superfamily |