Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyCdc48 N-terminal domain-like 8020131 4002365 SCOP2 (2022-06-29)
ASCOP2 FamilyExtended AAA-ATPase domain 8020132 4000283 SCOP2 (2022-06-29)
ASCOP2 FamilyCdc48 domain 2-like 8020134 4001091 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyADC-like 8032511 3001132 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRecA-like P-loop NTPases 8032512 3002019 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCdc48 domain 2-like 8032514 3000725 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104156 3002834 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACDC48_Ne1e32A1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
ACDC48e1e32A7 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
ACDC48_2e1e32A3 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
ASigma54_activate1e32A5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (4.3.0)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A3.10.330.10 Alpha Beta Roll Vcp-like ATPase Chain A, domain 2CATH (4.3.0)
A1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
P97