8WIK

Crystal structure of human FSP1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.227 

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Literature

The crystal structure of human ferroptosis suppressive protein 1 in complex with flavin adenine dinucleotide and nicotinamide adenine nucleotide.

Feng, S.Huang, X.Tang, D.Liu, X.Ouyang, L.Yang, D.Wang, K.Liao, B.Qi, S.

(2024) MedComm (2020) 5: e479-e479

  • DOI: https://doi.org/10.1002/mco2.479
  • Primary Citation of Related Structures:  
    8WIK

  • PubMed Abstract: 

    Ferroptosis is a recently discovered form of regulated cell death characterized by its distinct dependence on iron and the peroxidation of lipids within cellular membranes. Ferroptosis plays a crucial role in physiological and pathological situations and has attracted the attention of numerous scientists. Ferroptosis suppressive protein 1 (FSP1) is one of the main regulators that negatively regulates ferroptosis through the GPX4-independent FSP1-CoQ10-NAD(P)H axis and is a potential therapeutic target for ferroptosis-related diseases. However, the crystal structure of FSP1 has not been resolved, which hinders the development of therapeutic strategies targeting FSP1. To unravel this puzzle, we purified the human FSP1 (hFSP1) protein using the baculovirus eukaryotic cell expression system and solved its crystal structure at a resolution of 1.75 Å. Furthermore, we evaluated the oxidoreductase activity of hFSP1 with NADH as the substrate and identified E156 as the key amino acid in maintaining hFSP1 activity. Interestingly, our results indicated that hFSP1 exists and functions in a monomeric state. Mutagenesis analysis revealed the critical role of the C-terminal domain in the binding of substrate. These findings significantly enhance our understanding of the functional mechanism of FSP1 and provide a precise model for further drug development.


  • Organizational Affiliation

    Department of Urology and Institute of Urology (Laboratory of Reconstructive Urology) State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, College of Life Sciences, Sichuan University Chengdu China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferroptosis suppressor protein 1373Homo sapiensMutation(s): 0 
Gene Names: AIFM2AMIDPRG3
EC: 1.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRQ8 (Homo sapiens)
Explore Q9BRQ8 
Go to UniProtKB:  Q9BRQ8
PHAROS:  Q9BRQ8
GTEx:  ENSG00000042286 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BRQ8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
6FA (Subject of Investigation/LOI)
Query on 6FA

Download Ideal Coordinates CCD File 
B [auth A]6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O16 P2
BJSUUWFQAMLNKU-OKXKTURISA-N
NAD (Subject of Investigation/LOI)
Query on NAD

Download Ideal Coordinates CCD File 
C [auth A]NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.227 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.875α = 90
b = 56.875β = 90
c = 505.105γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China82304600
National Natural Science Foundation of China (NSFC)China32201025
National Natural Science Foundation of China (NSFC)China32071214

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-08
    Type: Initial release