7MGE

Structure of C9orf72:SMCR8:WDR41 in complex with ARF1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for the ARF GAP activity and specificity of the C9orf72 complex.

Su, M.Y.Fromm, S.A.Remis, J.Toso, D.B.Hurley, J.H.

(2021) Nat Commun 12: 3786-3786

  • DOI: https://doi.org/10.1038/s41467-021-24081-0
  • Primary Citation of Related Structures:  
    7MGE

  • PubMed Abstract: 

    Mutation of C9ORF72 is the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontal temporal degeneration (FTD), which is attributed to both a gain and loss of function. C9orf72 forms a complex with SMCR8 and WDR41, which was reported to have GTPase activating protein activity toward ARF proteins, RAB8A, and RAB11A. We determined the cryo-EM structure of ARF1-GDP-BeF 3 - bound to C9orf72:SMCR8:WDR41. The SMCR8 longin and C9orf72 longin domains form the binding pocket for ARF1. One face of the C9orf72 longin domain holds ARF1 in place, while the SMCR8 longin positions the catalytic finger Arg147 in the ARF1 active site. Mutations in interfacial residues of ARF1 and C9orf72 reduced or eliminated GAP activity. RAB8A GAP required ~10-fold higher concentrations of the C9orf72 complex than for ARF1. These data support a specific function for the C9orf72 complex as an ARF GAP. The structure also provides a model for the active forms of the longin domain GAPs of FLCN and NPRL2 that regulate the Rag GTPases of the mTORC1 pathway.


  • Organizational Affiliation

    School of Medicine, Southern University of Science and Technology, Shenzhen, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
WD repeat-containing protein 41459Homo sapiensMutation(s): 0 
Gene Names: WDR41MSTP048
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HAD4 (Homo sapiens)
Explore Q9HAD4 
Go to UniProtKB:  Q9HAD4
PHAROS:  Q9HAD4
GTEx:  ENSG00000164253 
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UniProt GroupQ9HAD4
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide exchange protein SMCR8937Homo sapiensMutation(s): 0 
Gene Names: SMCR8
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TEV9 (Homo sapiens)
Explore Q8TEV9 
Go to UniProtKB:  Q8TEV9
PHAROS:  Q8TEV9
GTEx:  ENSG00000176994 
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UniProt GroupQ8TEV9
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide exchange C9orf72481Homo sapiensMutation(s): 0 
Gene Names: C9orf72
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Find proteins for Q96LT7 (Homo sapiens)
Explore Q96LT7 
Go to UniProtKB:  Q96LT7
PHAROS:  Q96LT7
GTEx:  ENSG00000147894 
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UniProt GroupQ96LT7
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ADP-ribosylation factor 1D [auth E]166Homo sapiensMutation(s): 0 
Gene Names: ARF1
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Find proteins for P84077 (Homo sapiens)
Explore P84077 
Go to UniProtKB:  P84077
PHAROS:  P84077
GTEx:  ENSG00000143761 
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UniProt GroupP84077
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Defense (DOD, United States)United StatesW81XWH2010086

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-23
    Type: Initial release
  • Version 1.1: 2021-07-28
    Changes: Database references