6ZMI

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.

Thoms, M., Buschauer, R., Ameismeier, M., Koepke, L., Denk, T., Hirschenberger, M., Kratzat, H., Hayn, M., Mackens-Kiani, T., Cheng, J., Straub, J.H., Sturzel, C.M., Frohlich, T., Berninghausen, O., Becker, T., Kirchhoff, F., Sparrer, K.M.J., Beckmann, R.

(2020) Science 369: 1249-1255

  • DOI: 10.1126/science.abc8665
  • Primary Citation of Related Structures:  
    6ZME, 6ZLW, 6ZM7, 6ZMT, 6ZN5, 6ZMI, 6ZMO, 6ZP4, 6ZON

  • PubMed Abstract: 

    • Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of the current coronavirus disease 2019 (COVID-19) pandemic. A major virulence factor of SARS-CoVs is the nonstructural protein 1 (Nsp1), which suppresses host gene e ...

    Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of the current coronavirus disease 2019 (COVID-19) pandemic. A major virulence factor of SARS-CoVs is the nonstructural protein 1 (Nsp1), which suppresses host gene expression by ribosome association. Here, we show that Nsp1 from SARS-CoV-2 binds to the 40 S ribosomal subunit, resulting in shutdown of messenger RNA (mRNA) translation both in vitro and in cells. Structural analysis by cryo-electron microscopy of in vitro-reconstituted Nsp1-40 S and various native Nsp1-40 S and -80 S complexes revealed that the Nsp1 C terminus binds to and obstructs the mRNA entry tunnel. Thereby, Nsp1 effectively blocks retinoic acid-inducible gene I-dependent innate immune responses that would otherwise facilitate clearance of the infection. Thus, the structural characterization of the inhibitory mechanism of Nsp1 may aid structure-based drug design against SARS-CoV-2.

    Organizational Affiliation: 

    Gene Center Munich, Department of Biochemistry, University of Munich, Munich, Germany. beckmann@genzentrum.lmu.de konstantin.sparrer@uni-ulm.de.



Macromolecules

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L8LA257Homo sapiensMutation(s): 0 
Gene Names: RPL8
Find proteins for P62917 (Homo sapiens)
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PHAROS  P62917
GTEx  ENSG00000161016
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L3LB403Homo sapiensMutation(s): 0 
Gene Names: RPL3, OK/SW-cl.32
Find proteins for P39023 (Homo sapiens)
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PHAROS  P39023
GTEx  ENSG00000100316
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L4LC427Homo sapiensMutation(s): 0 
Gene Names: RPL4, RPL1
Find proteins for P36578 (Homo sapiens)
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PHAROS  P36578
GTEx  ENSG00000174444
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L5LD297Homo sapiensMutation(s): 0 
Gene Names: RPL5, MSTP030
Find proteins for P46777 (Homo sapiens)
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PHAROS  P46777
GTEx  ENSG00000122406
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L6LE288Homo sapiensMutation(s): 0 
Gene Names: RPL6, TXREB1
Find proteins for Q02878 (Homo sapiens)
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PHAROS  Q02878
GTEx  ENSG00000089009
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L7LF248Homo sapiensMutation(s): 0 
Gene Names: RPL7
Find proteins for P18124 (Homo sapiens)
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PHAROS  P18124
GTEx  ENSG00000147604
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L7aLG266Homo sapiensMutation(s): 0 
Gene Names: RPL7A, SURF-3, SURF3
Find proteins for P62424 (Homo sapiens)
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PHAROS  P62424
GTEx  ENSG00000148303
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L9LH192Homo sapiensMutation(s): 0 
Gene Names: RPL9, OK/SW-cl.103, RPL9P7, RPL9P8, RPL9P9
Find proteins for P32969 (Homo sapiens)
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PHAROS  P32969
GTEx  ENSG00000163682
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L10-likeLI214Homo sapiensMutation(s): 0 
Gene Names: RPL10L
Find proteins for Q96L21 (Homo sapiens)
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PHAROS  Q96L21
GTEx  ENSG00000165496
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Entity ID: 13
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60S ribosomal protein L11LJ178Homo sapiensMutation(s): 0 
Gene Names: RPL11
Find proteins for P62913 (Homo sapiens)
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PHAROS  P62913
GTEx  ENSG00000142676
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Entity ID: 14
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60S ribosomal protein L13LL211Homo sapiensMutation(s): 0 
Gene Names: RPL13, BBC1, OK/SW-cl.46
Find proteins for P26373 (Homo sapiens)
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GTEx  ENSG00000167526
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L14LM215Homo sapiensMutation(s): 0 
Gene Names: RPL14
Find proteins for P50914 (Homo sapiens)
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PHAROS  P50914
GTEx  ENSG00000188846
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Entity ID: 16
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60S ribosomal protein L15LN204Homo sapiensMutation(s): 0 
Gene Names: RPL15, EC45, TCBAP0781
Find proteins for P61313 (Homo sapiens)
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GTEx  ENSG00000174748
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Entity ID: 17
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60S ribosomal protein L13aLO203Homo sapiensMutation(s): 0 
Gene Names: RPL13A
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GTEx  ENSG00000142541
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Entity ID: 18
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60S ribosomal protein L17LP184Homo sapiensMutation(s): 0 
Gene Names: RPL17
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GTEx  ENSG00000265681
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Entity ID: 19
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60S ribosomal protein L18LQ188Homo sapiensMutation(s): 0 
Gene Names: RPL18
Find proteins for Q07020 (Homo sapiens)
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GTEx  ENSG00000063177
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Entity ID: 20
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60S ribosomal protein L19LR196Homo sapiensMutation(s): 0 
Gene Names: RPL19
Find proteins for P84098 (Homo sapiens)
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GTEx  ENSG00000108298
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Entity ID: 21
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60S ribosomal protein L18aLS176Homo sapiensMutation(s): 0 
Gene Names: RPL18A
Find proteins for Q02543 (Homo sapiens)
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GTEx  ENSG00000105640
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Entity ID: 22
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60S ribosomal protein L21LT160Homo sapiensMutation(s): 0 
Gene Names: RPL21
Find proteins for P46778 (Homo sapiens)
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PHAROS  P46778
GTEx  ENSG00000122026
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Entity ID: 23
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60S ribosomal protein L22LU128Homo sapiensMutation(s): 0 
Gene Names: RPL22
Find proteins for P35268 (Homo sapiens)
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PHAROS  P35268
GTEx  ENSG00000116251
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Entity ID: 24
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60S ribosomal protein L23LV140Homo sapiensMutation(s): 0 
Gene Names: RPL23
Find proteins for P62829 (Homo sapiens)
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PHAROS  P62829
GTEx  ENSG00000125691
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Entity ID: 25
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60S ribosomal protein L24LW157Homo sapiensMutation(s): 0 
Gene Names: RPL24
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PHAROS  P83731
GTEx  ENSG00000114391
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Entity ID: 26
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60S ribosomal protein L23aLX156Homo sapiensMutation(s): 0 
Gene Names: RPL23A
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PHAROS  P62750
GTEx  ENSG00000198242
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L26LY145Homo sapiensMutation(s): 0 
Gene Names: RPL26
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PHAROS  P61254
GTEx  ENSG00000161970
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L27LZ136Homo sapiensMutation(s): 0 
Gene Names: RPL27
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PHAROS  P61353
GTEx  ENSG00000131469
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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L27aLa148Homo sapiensMutation(s): 0 
Gene Names: RPL27A
Find proteins for P46776 (Homo sapiens)
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PHAROS  P46776
GTEx  ENSG00000166441
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L29Lb159Homo sapiensMutation(s): 0 
Gene Names: RPL29
Find proteins for P47914 (Homo sapiens)
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GTEx  ENSG00000162244
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L30Lc115Homo sapiensMutation(s): 0 
Gene Names: RPL30
Find proteins for P62888 (Homo sapiens)
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PHAROS  P62888
GTEx  ENSG00000156482
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Entity ID: 32
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60S ribosomal protein L31Ld125Homo sapiensMutation(s): 0 
Gene Names: RPL31
Find proteins for P62899 (Homo sapiens)
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GTEx  ENSG00000071082
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Entity ID: 33
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60S ribosomal protein L32Le135Homo sapiensMutation(s): 0 
Gene Names: RPL32, PP9932
Find proteins for P62910 (Homo sapiens)
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PHAROS  P62910
GTEx  ENSG00000144713
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Entity ID: 34
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60S ribosomal protein L35aLf110Homo sapiensMutation(s): 0 
Gene Names: RPL35A, GIG33
Find proteins for P18077 (Homo sapiens)
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PHAROS  P18077
GTEx  ENSG00000182899
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Entity ID: 35
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60S ribosomal protein L34Lg117Homo sapiensMutation(s): 0 
Gene Names: RPL34
Find proteins for P49207 (Homo sapiens)
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PHAROS  P49207
GTEx  ENSG00000109475
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Entity ID: 36
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60S ribosomal protein L35Lh123Homo sapiensMutation(s): 0 
Gene Names: RPL35
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GTEx  ENSG00000136942
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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L36Li105Homo sapiensMutation(s): 0 
Gene Names: RPL36
Find proteins for Q9Y3U8 (Homo sapiens)
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PHAROS  Q9Y3U8
GTEx  ENSG00000130255
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L37Lj97Homo sapiensMutation(s): 0 
Gene Names: RPL37
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PHAROS  P61927
GTEx  ENSG00000145592
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Entity ID: 39
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60S ribosomal protein L38Lk70Homo sapiensMutation(s): 0 
Gene Names: RPL38
Find proteins for P63173 (Homo sapiens)
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PHAROS  P63173
GTEx  ENSG00000172809
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Entity ID: 40
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60S ribosomal protein L39Ll51Homo sapiensMutation(s): 0 
Gene Names: RPL39
Find proteins for P62891 (Homo sapiens)
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PHAROS  P62891
GTEx  ENSG00000198918
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Entity ID: 41
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Ubiquitin-60S ribosomal protein L40Lm128Homo sapiensMutation(s): 0 
Gene Names: UBA52, UBCEP2
Find proteins for P62987 (Homo sapiens)
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PHAROS  P62987
GTEx  ENSG00000221983
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Entity ID: 42
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60S ribosomal protein L41Ln25Homo sapiensMutation(s): 0 
Gene Names: RPL41
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PHAROS  P62945
GTEx  ENSG00000229117
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Entity ID: 43
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60S ribosomal protein L36aLo106Homo sapiensMutation(s): 0 
Gene Names: RPL36A, RPL44, GIG15, MIG6
Find proteins for P83881 (Homo sapiens)
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PHAROS  P83881
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Entity ID: 44
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60S ribosomal protein L37aLp92Homo sapiensMutation(s): 0 
Gene Names: RPL37A
Find proteins for P61513 (Homo sapiens)
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PHAROS  P61513
GTEx  ENSG00000197756
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Entity ID: 45
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60S ribosomal protein L28Lr137Homo sapiensMutation(s): 0 
Gene Names: RPL28
Find proteins for P46779 (Homo sapiens)
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PHAROS  P46779
GTEx  ENSG00000108107
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Entity ID: 46
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60S acidic ribosomal protein P0Ls317Homo sapiensMutation(s): 0 
Gene Names: RPLP0
Find proteins for P05388 (Homo sapiens)
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PHAROS  P05388
GTEx  ENSG00000089157
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Entity ID: 47
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60S ribosomal protein L12Lt165Homo sapiensMutation(s): 0 
Gene Names: RPL12
Find proteins for P30050 (Homo sapiens)
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PHAROS  P30050
GTEx  ENSG00000197958
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Entity ID: 48
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60S ribosomal protein L10aLz217Homo sapiensMutation(s): 0 
Gene Names: RPL10A, NEDD6
Find proteins for P62906 (Homo sapiens)
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PHAROS  P62906
GTEx  ENSG00000198755
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Entity ID: 50
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40S ribosomal protein SASA295Homo sapiensMutation(s): 0 
Gene Names: RPSA, LAMBR, LAMR1
Find proteins for P08865 (Homo sapiens)
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PHAROS  P08865
GTEx  ENSG00000168028
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Entity ID: 51
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40S ribosomal protein S3aSB264Homo sapiensMutation(s): 0 
Gene Names: RPS3A, FTE1, MFTL
Find proteins for P61247 (Homo sapiens)
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PHAROS  P61247
GTEx  ENSG00000145425
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Entity ID: 52
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40S ribosomal protein S3SD243Homo sapiensMutation(s): 0 
Gene Names: RPS3, OK/SW-cl.26
EC: 4.2.99.18
Find proteins for P23396 (Homo sapiens)
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PHAROS  P23396
GTEx  ENSG00000149273
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Entity ID: 53
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40S ribosomal protein S4, X isoformSE263Homo sapiensMutation(s): 0 
Gene Names: RPS4X, CCG2, RPS4, SCAR
Find proteins for P62701 (Homo sapiens)
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PHAROS  P62701
GTEx  ENSG00000198034
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Entity ID: 54
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S5SF204Homo sapiensMutation(s): 0 
Gene Names: RPS5
Find proteins for P46782 (Homo sapiens)
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PHAROS  P46782
GTEx  ENSG00000083845
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Entity ID: 55
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S7SH194Homo sapiensMutation(s): 0 
Gene Names: RPS7
Find proteins for P62081 (Homo sapiens)
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PHAROS  P62081
GTEx  ENSG00000171863
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Entity ID: 56
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S8SI208Homo sapiensMutation(s): 0 
Gene Names: RPS8, OK/SW-cl.83
Find proteins for P62241 (Homo sapiens)
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PHAROS  P62241
GTEx  ENSG00000142937
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Entity ID: 57
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S10SK165Homo sapiensMutation(s): 0 
Gene Names: RPS10
Find proteins for P46783 (Homo sapiens)
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PHAROS  P46783
GTEx  ENSG00000124614
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Entity ID: 58
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S11SL158Homo sapiensMutation(s): 0 
Gene Names: RPS11
Find proteins for P62280 (Homo sapiens)
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PHAROS  P62280
GTEx  ENSG00000142534
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Entity ID: 59
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S15SP145Homo sapiensMutation(s): 0 
Gene Names: RPS15, RIG
Find proteins for P62841 (Homo sapiens)
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PHAROS  P62841
GTEx  ENSG00000115268
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Entity ID: 60
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S16SQ146Homo sapiensMutation(s): 0 
Gene Names: RPS16
Find proteins for P62249 (Homo sapiens)
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PHAROS  P62249
GTEx  ENSG00000105193
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Entity ID: 61
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S17SR135Homo sapiensMutation(s): 0 
Gene Names: RPS17, RPS17L
Find proteins for P08708 (Homo sapiens)
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PHAROS  P08708
GTEx  ENSG00000182774
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Entity ID: 62
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S18SS152Homo sapiensMutation(s): 0 
Gene Names: RPS18, D6S218E
Find proteins for P62269 (Homo sapiens)
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PHAROS  P62269
GTEx  ENSG00000231500
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Entity ID: 63
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S19ST145Homo sapiensMutation(s): 0 
Gene Names: RPS19
Find proteins for P39019 (Homo sapiens)
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PHAROS  P39019
GTEx  ENSG00000105372
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Entity ID: 64
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S20SU119Homo sapiensMutation(s): 0 
Gene Names: RPS20
Find proteins for P60866 (Homo sapiens)
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PHAROS  P60866
GTEx  ENSG00000008988
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Entity ID: 65
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S21SV83Homo sapiensMutation(s): 0 
Gene Names: RPS21
Find proteins for P63220 (Homo sapiens)
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PHAROS  P63220
GTEx  ENSG00000171858
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Entity ID: 66
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S23SX143Homo sapiensMutation(s): 0 
Gene Names: RPS23
Find proteins for P62266 (Homo sapiens)
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PHAROS  P62266
GTEx  ENSG00000186468
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Entity ID: 67
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S26Sa115Homo sapiensMutation(s): 0 
Gene Names: RPS26
Find proteins for P62854 (Homo sapiens)
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PHAROS  P62854
GTEx  ENSG00000197728
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Entity ID: 68
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S28Sc69Homo sapiensMutation(s): 0 
Gene Names: RPS28
Find proteins for P62857 (Homo sapiens)
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PHAROS  P62857
GTEx  ENSG00000233927
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Entity ID: 69
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S29Sd56Homo sapiensMutation(s): 0 
Gene Names: RPS29
Find proteins for P62273 (Homo sapiens)
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PHAROS  P62273
GTEx  ENSG00000213741
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Entity ID: 70
MoleculeChainsSequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1Sg317Homo sapiensMutation(s): 0 
Gene Names: RACK1, GNB2L1, HLC7, PIG21
Find proteins for P63244 (Homo sapiens)
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PHAROS  P63244
GTEx  ENSG00000204628
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Entity ID: 71
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S2SC293Homo sapiensMutation(s): 0 
Gene Names: RPS2, RPS4
Find proteins for P15880 (Homo sapiens)
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PHAROS  P15880
GTEx  ENSG00000140988
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Entity ID: 72
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S6SG249Homo sapiensMutation(s): 0 
Gene Names: RPS6, OK/SW-cl.2
Find proteins for P62753 (Homo sapiens)
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PHAROS  P62753
GTEx  ENSG00000137154
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Entity ID: 73
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S9SJ194Homo sapiensMutation(s): 0 
Gene Names: RPS9
Find proteins for P46781 (Homo sapiens)
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PHAROS  P46781
GTEx  ENSG00000170889
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Entity ID: 74
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S12SM132Homo sapiensMutation(s): 0 
Gene Names: RPS12
Find proteins for P25398 (Homo sapiens)
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PHAROS  P25398
GTEx  ENSG00000112306
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Entity ID: 75
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S13SN151Homo sapiensMutation(s): 0 
Gene Names: RPS13
Find proteins for P62277 (Homo sapiens)
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PHAROS  P62277
GTEx  ENSG00000110700
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Entity ID: 76
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S14SO151Homo sapiensMutation(s): 0 
Gene Names: RPS14, PRO2640
Find proteins for P62263 (Homo sapiens)
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PHAROS  P62263
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Entity ID: 77
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S15aSW130Homo sapiensMutation(s): 0 
Gene Names: RPS15A, OK/SW-cl.82
Find proteins for P62244 (Homo sapiens)
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PHAROS  P62244
GTEx  ENSG00000134419
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Entity ID: 78
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S24SY133Homo sapiensMutation(s): 0 
Gene Names: RPS24
Find proteins for P62847 (Homo sapiens)
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PHAROS  P62847
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Entity ID: 79
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S25SZ125Homo sapiensMutation(s): 0 
Gene Names: RPS25
Find proteins for P62851 (Homo sapiens)
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PHAROS  P62851
GTEx  ENSG00000118181
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Entity ID: 80
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S27Sb84Homo sapiensMutation(s): 0 
Gene Names: RPS27, MPS1
Find proteins for P42677 (Homo sapiens)
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PHAROS  P42677
GTEx  ENSG00000177954
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Entity ID: 81
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S30Se59Homo sapiensMutation(s): 0 
Gene Names: FAU
Find proteins for P62861 (Homo sapiens)
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PHAROS  P62861
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Entity ID: 82
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aSf156Homo sapiensMutation(s): 0 
Gene Names: RPS27A, UBA80, UBCEP1
Find proteins for P62979 (Homo sapiens)
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PHAROS  P62979
GTEx  ENSG00000143947
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Entity ID: 83
MoleculeChainsSequence LengthOrganismDetailsImage
Proliferation-associated protein 2G4CA394Homo sapiensMutation(s): 0 
Gene Names: PA2G4, EBP1
Find proteins for Q9UQ80 (Homo sapiens)
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PHAROS  Q9UQ80
GTEx  ENSG00000170515
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Entity ID: 85
MoleculeChainsSequence LengthOrganismDetailsImage
Cell growth-regulating nucleolar proteinCE379Homo sapiensMutation(s): 0 
Gene Names: LYAR, PNAS-5
Find proteins for Q9NX58 (Homo sapiens)
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PHAROS  Q9NX58
GTEx  ENSG00000145220
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Entity ID: 86
MoleculeChainsSequence LengthOrganismDetailsImage
Non-structural protein 1i180Severe acute respiratory syndrome coronavirus 2Mutation(s): 0 
Gene Names: rep, 1a-1b
EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data), 3.4.22.69 (PDB Primary Data), 2.7.7.48 (PDB Primary Data), 3.6.4.12 (PDB Primary Data), 3.6.4.13 (PDB Primary Data), 3.1.13 (PDB Primary Data), 3.1 (PDB Primary Data), 2.1.1 (PDB Primary Data)
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2)
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Entity ID: 1
MoleculeChainsLengthOrganismImage
28S ribosomal RNAL55066Homo sapiens
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Entity ID: 2
MoleculeChainsLengthOrganismImage
5S ribosomal RNAL7121Homo sapiens
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Entity ID: 3
MoleculeChainsLengthOrganismImage
5.8S ribosomal RNAL8157Homo sapiens
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Entity ID: 49
MoleculeChainsLengthOrganismImage
18S ribosomal RNAS21869Homo sapiens
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Entity ID: 84
MoleculeChainsLengthOrganismImage
tRNACC75Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
Lg, Lj, Lm, Lo, Lp, Sa, Sd, Sf
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
Download Ideal Coordinates CCD File 
L5, L7, L8, LA, LI, LP, LV, Le, Lg, Lj, S2
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySFB/TRR-174
German Research Foundation (DFG)GermanyBE1814/15-1
German Research Foundation (DFG)GermanyBE1814/1-1

Revision History 

  • Version 1.0: 2020-08-19
    Type: Initial release
  • Version 1.1: 2020-09-16
    Changes: Database references