6ZI1

Crystal structure of the isolated H. influenzae VapD toxin (D7N mutant)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report



Literature

Structural Basis for Toxin Inhibition in the VapXD Toxin-Antitoxin System

Bertelsen, M.B.Senissar, M.Nielsen, M.H.Bisiak, F.Cunha, M.V.Molinaro, A.L.Daines, D.A.Brodersen, D.E.

(2020) Structure 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Endoribonuclease VapDAAABBB102Haemophilus influenzae 86-028NPMutation(s): 1 
Gene Names: vapDNTHI0577
EC: 3.1
Find proteins for Q4QN95 (Haemophilus influenzae (strain 86-028NP))
Explore Q4QN95 
Go to UniProtKB:  Q4QN95
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.214 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.38α = 90
b = 84.38β = 90
c = 49.48γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmarkNNF18OC0030646

Revision History 

  • Version 1.0: 2020-10-14
    Type: Initial release