6X64

Legionella pneumophila Dot T4SS PR

  • Classification: PROTEIN TRANSPORT
  • Organism(s): Legionella pneumophila
  • Mutation(s): No 

  • Deposited: 2020-05-27 Released: 2020-10-07 
  • Deposition Author(s): Durie, C.L., Sheedlo, M.J., Chung, J.M., Byrne, B.G., Su, M., Knight, T., Swanson, M.S., Lacy, D.B., Ohi, M.D.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK), National Institutes of Health/Office of the Director, National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Other private, Other government

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex.

Durie, C.L.Sheedlo, M.J.Chung, J.M.Byrne, B.G.Su, M.Knight, T.Swanson, M.Lacy, D.B.Ohi, M.D.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.59530
  • Primary Citation of Related Structures:  
    6X62, 6X64, 6X65, 6X66

  • PubMed Abstract: 

    Legionella pneumophila is an opportunistic pathogen that causes the potentially fatal pneumonia Legionnaires' Disease. This infection and subsequent pathology require the Dot/Icm Type IV Secretion System (T4SS) to deliver effector proteins into host cells. Compared to prototypical T4SSs, the Dot/Icm assembly is much larger, containing ~27 different components including a core complex reported to be composed of five proteins: DotC, DotD, DotF, DotG, and DotH. Using single particle cryo-electron microscopy (cryo-EM), we report reconstructions of the core complex of the Dot/Icm T4SS that includes a symmetry mismatch between distinct structural features of the outer membrane cap (OMC) and periplasmic ring (PR). We present models of known core complex proteins, DotC, DotD, and DotH, and two structurally similar proteins within the core complex, DotK and Lpg0657. This analysis reveals the stoichiometry and contact interfaces between the key proteins of the Dot/Icm T4SS core complex and provides a framework for understanding a complex molecular machine.


  • Organizational Affiliation

    Life Sciences Institute, University of Michigan, Ann Arbor, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Type IV secretion system unknown protein fragment330Legionella pneumophilaMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI150027-01
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United States2T32DK007673
National Institutes of Health/Office of the DirectorUnited StatesS10OD020011
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24 GM129539
Other privateUnited StatesSF349247
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States5R01AI095755-10
Other governmentUnited States1I01BX004447

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-07
    Type: Initial release
  • Version 1.1: 2024-03-06
    Changes: Database references